RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 CLEC18AA5D8T8 446 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 CCT8L1PA6NM43 557 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 P2RX6O15547 441 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 UGDHO60701 494 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 ATP6AP2O75787 350 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 CHEK2O96017 543 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 HEXBP07686 556 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 SLC35G6P0C7Q6 338 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 ICAM2P13598 275 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 CASP2P42575 452 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 AP2B1P63010 937 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 IFT88Q13099 833 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 SLBPQ14493 270 aaKnown RBP eCLIP11.93□□□□□ -0.5
PNKP-217ENST00000625216 ABRAXAS2Q15018 415 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 ZRSR2Q15696 482 aaKnown RBP11.93□□□□□ -0.5
PNKP-217ENST00000625216 TBCCQ15814 346 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 PLEKHN1Q494U1 663 aaPredicted RBP11.93□□□□□ -0.5
PNKP-217ENST00000625216 LIPJQ5W064 366 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 NXNQ6DKJ4 435 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 TMEM214Q6NUQ4 689 aaKnown RBP11.93□□□□□ -0.5
PNKP-217ENST00000625216 NIPAL1Q6NVV3 410 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 NXPE4Q6UWF7 544 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 CLEC18BQ6UXF7 455 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 Q6ZS92 163 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 TRPM8Q7Z2W7 1104 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 ASPGQ86U10 573 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 MTDHQ86UE4 582 aaKnown RBP11.93□□□□□ -0.5
PNKP-217ENST00000625216 PARP9Q8IXQ6 854 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 KBTBD2Q8IY47 623 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 PRSS58Q8IYP2 241 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 FITM2Q8N6M3 262 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 MFSD9Q8NBP5 474 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 CLEC18CQ8NCF0 446 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 ACTRT2Q8TDY3 377 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 SLC13A3Q8WWT9 602 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 PTCD3Q96EY7 689 aaKnown RBP11.93□□□□□ -0.5
PNKP-217ENST00000625216 MARK4Q96L34 752 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 LMF1Q96S06 567 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 ZNF385DQ9H6B1 395 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 SLC22A7Q9Y694 548 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 FLNCQ14315 2725 aa11.93□□□□□ -0.5
PNKP-217ENST00000625216 RP1L1Q8IWN7 2480 aaPredicted RBP11.93□□□□□ -0.5
PNKP-217ENST00000625216 PCSK5Q92824 1860 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 LOC102723996A0A087X1L8 192 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 NSG1A0A0A6YYJ2 146 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 TRBC2A0A5B9 178 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 MASP2O00187 686 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 EBAG9O00559 213 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 LCMT2O60294 686 aaKnown RBP11.92□□□□□ -0.5
PNKP-217ENST00000625216 UBOX5O94941 541 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 BMP10O95393 424 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 PRR35P0CG20 571 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 C1GALT1C1LP0DN25 315 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 GNAZP19086 355 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 IL10P22301 178 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 BCL6P41182 706 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 HNF4AP41235 474 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 PWP1Q13610 501 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 SPRED3Q2MJR0 410 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 SGO1Q5FBB7 561 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 ADNP2Q6IQ32 1131 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 TMEM205Q6UW68 189 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 ISLR2Q6UXK2 745 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 RIPOR1Q6ZS17 1223 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 Q6ZSR9 355 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 LARP4Q71RC2 724 aaKnown RBP eCLIP11.92□□□□□ -0.5
PNKP-217ENST00000625216 CLNKQ7Z7G1 428 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 RNF175Q8N4F7 328 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 FAM26EQ8N5C1 309 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 OR9A4Q8NGU2 314 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 WDR20Q8TBZ3 569 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 METTL21AQ8WXB1 218 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 CCT6BQ92526 530 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 THOC3Q96J01 351 aaKnown RBP11.92□□□□□ -0.5
PNKP-217ENST00000625216 MAGEB10Q96LZ2 347 aaPredicted RBP11.92□□□□□ -0.5
PNKP-217ENST00000625216 WDR77Q9BQA1 342 aaPredicted RBP11.92□□□□□ -0.5
PNKP-217ENST00000625216 EHD1Q9H4M9 534 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 EPS8L2Q9H6S3 715 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 AKTIPQ9H8T0 292 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 PELI2Q9HAT8 420 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 ZNF160Q9HCG1 818 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 ANKHQ9HCJ1 492 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 SAR1AQ9NR31 198 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 RIC8BQ9NVN3 520 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 ARMCX1Q9P291 453 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 ZFP69BQ9UJL9 534 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 CCL27Q9Y4X3 112 aa11.92□□□□□ -0.5
PNKP-217ENST00000625216 IGHV1-45A0A0A0MS14 117 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 FEZF1A0PJY2 475 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 H0YIV9 168 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 PDYNP01213 254 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 KRT6AP02538 564 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 KRT6BP04259 564 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 SERPINA7P05543 415 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 SERPINA6P08185 405 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 ALDOCP09972 364 aaKnown RBP11.91□□□□□ -0.5
PNKP-217ENST00000625216 COX6A1P12074 109 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 KRT6CP48668 564 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 NEK2P51955 445 aa11.91□□□□□ -0.5
PNKP-217ENST00000625216 SKP1P63208 163 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms