RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CSMD1Q96PZ7 3565 aa11.09□□□□□ -0.63
UPF3B-204ENST00000619445 PDZD2O15018 2839 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 PHF3Q92576 2039 aaKnown RBP11.08□□□□□ -0.64
UPF3B-204ENST00000619445 TCRBV9S1A1TA0A576 114 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 CTAGE15A4D2H0 777 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 OR14I1A6ND48 311 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 FAM159BA6NKW6 160 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 SYCE1LA8MT33 242 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 TAPBPO15533 448 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 SCELO95171 688 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 CERS1P27544 350 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 CRABP2P29373 138 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 STX2P32856 288 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 HSPA7P48741 367 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 DOC2AQ14183 400 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 AP5B1Q2VPB7 878 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 MED27Q6P2C8 311 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 RTL4Q6ZR62 310 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 C3orf62Q6ZUJ4 267 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 ACAD11Q709F0 780 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 TBC1D1Q86TI0 1168 aaPredicted RBP11.08□□□□□ -0.64
UPF3B-204ENST00000619445 CTAGE6Q86UF2 777 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 CHERPQ8IWX8 916 aaKnown RBP11.08□□□□□ -0.64
UPF3B-204ENST00000619445 DND1Q8IYX4 353 aaKnown RBP11.08□□□□□ -0.64
UPF3B-204ENST00000619445 FAM47BQ8NA70 645 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 SDCCAG3Q96C92 435 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 CMTM7Q96FZ5 175 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 ART5Q96L15 291 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 LURAP1Q96LR2 239 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 ALOXE3Q9BYJ1 711 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 TRIM8Q9BZR9 551 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 CD244Q9BZW8 370 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 RAB17Q9H0T7 212 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 UTP11Q9Y3A2 253 aaKnown RBP11.08□□□□□ -0.64
UPF3B-204ENST00000619445 ADGRG4Q8IZF6 3080 aa11.08□□□□□ -0.64
UPF3B-204ENST00000619445 A0A0G2JN53 185 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 A0A1B0GTH9 108 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 PHGDHO43175 533 aaKnown RBP11.07□□□□□ -0.64
UPF3B-204ENST00000619445 HS6ST1O60243 411 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 CDC40O60508 579 aaKnown RBP eCLIP11.07□□□□□ -0.64
UPF3B-204ENST00000619445 CCNT2O60583 730 aaKnown RBP11.07□□□□□ -0.64
UPF3B-204ENST00000619445 OR2J2O76002 312 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 WISP2O76076 250 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 TNNI3P19429 210 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 HIST1H1TP22492 207 aaPredicted RBP11.07□□□□□ -0.64
UPF3B-204ENST00000619445 SSTR1P30872 391 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 CHRNB4P30926 498 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 TLX1P31314 330 aaPredicted RBP11.07□□□□□ -0.64
UPF3B-204ENST00000619445 PTGER1P34995 402 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 MSH2P43246 934 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 ST13P50502 369 aaKnown RBP11.07□□□□□ -0.64
UPF3B-204ENST00000619445 PHEXP78562 749 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 PLGLB1Q02325 96 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 CHIT1Q13231 466 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 CMPK2Q5EBM0 449 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 CAPN12Q6ZSI9 719 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 RAPH1Q70E73 1250 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 MDGA2Q7Z553 956 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 VN1R5Q7Z5H4 357 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 CD163Q86VB7 1156 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 CTAGE3PQ8IX95 158 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 LAS2Q8IYD9 372 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 ACOT4Q8N9L9 421 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 UBTD2Q8WUN7 234 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 RND1Q92730 232 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 REPS1Q96D71 796 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 RASL10BQ96S79 203 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 FAM173AQ9BQD7 235 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 PELOQ9BRX2 385 aaKnown RBP11.07□□□□□ -0.64
UPF3B-204ENST00000619445 MS4A8Q9BY19 250 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 ENKD1Q9H0I2 346 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 CAB39LQ9H9S4 337 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 PRDM7Q9NQW5 492 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 KCMF1Q9P0J7 381 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 OPTCQ9UBM4 332 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 PHF11Q9UIL8 331 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 ZNF223Q9UK11 482 aaPredicted RBP11.07□□□□□ -0.64
UPF3B-204ENST00000619445 ZNF490Q9ULM2 529 aaPredicted RBP11.07□□□□□ -0.64
UPF3B-204ENST00000619445 CLDN16Q9Y5I7 305 aa11.07□□□□□ -0.64
UPF3B-204ENST00000619445 FIGNL2A6NMB9 653 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 C17orf105B2RV13 164 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 FAM47E-STBD1D6RA91 191 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 K7EPI3 171 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 ADAM10O14672 748 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 BCKDKO14874 412 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 KERAO60938 352 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 TBX6O95947 436 aaPredicted RBP11.06□□□□□ -0.64
UPF3B-204ENST00000619445 SNRPB2P08579 225 aaKnown RBP11.06□□□□□ -0.64
UPF3B-204ENST00000619445 HOXD4P09016 255 aaPredicted RBP11.06□□□□□ -0.64
UPF3B-204ENST00000619445 EPB42P16452 691 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 ATP5A1P25705 553 aaKnown RBP11.06□□□□□ -0.64
UPF3B-204ENST00000619445 PIK3CBP42338 1070 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 SSR2P43308 183 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 PIK3CGP48736 1102 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 HNRNPFP52597 415 aaKnown RBP11.06□□□□□ -0.64
UPF3B-204ENST00000619445 PPIAP62937 165 aaKnown RBP11.06□□□□□ -0.64
UPF3B-204ENST00000619445 RNF4P78317 190 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 HSF1Q00613 529 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 OR4D1Q15615 310 aa11.06□□□□□ -0.64
UPF3B-204ENST00000619445 MPEG1Q2M385 716 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms