RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 COL9A2Q14055 689 aaPredicted RBP13.45□□□□□ -0.26
CPSF1-212ENST00000616140 UBXN2BQ14CS0 331 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 MCEMP1Q8IX19 187 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 JAGN1Q8N5M9 183 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 C3orf58Q8NDZ4 430 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 THEM6Q8WUY1 208 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 SECISBP2Q96T21 854 aaKnown RBP13.45□□□□□ -0.26
CPSF1-212ENST00000616140 ANKRD60Q9BZ19 345 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 IL26Q9NPH9 171 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 GNG8Q9UK08 70 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 POLR2CP19387 275 aaPredicted RBP13.45□□□□□ -0.26
CPSF1-212ENST00000616140 SPINT3P49223 89 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 BMXP51813 675 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 ARHGDIBP52566 201 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 CRISP1P54107 249 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 TLDC1Q6P9B6 456 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 CHERPQ8IWX8 916 aaKnown RBP13.45□□□□□ -0.26
CPSF1-212ENST00000616140 OR2L3Q8NG85 312 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 OR4K14Q8NGD5 310 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 CD200R1Q8TD46 325 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 C20orf27Q9GZN8 174 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 ARMC1Q9NVT9 282 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 CMAHPQ9Y471 501 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 PCDHB14Q9Y5E9 798 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 SCDO00767 359 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 GABBR2O75899 941 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 DCTP40126 519 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 LDLRAD1Q5T700 205 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 PPP2R2DQ66LE6 453 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 SCRN2Q96FV2 425 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 A0A1B0GVT2 93 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 C5orf51A6NDU8 294 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 PCP4L1A6NKN8 68 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 DEFB134Q4QY38 66 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 IER5LQ5T953 404 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 SPATC1Q76KD6 591 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 ARHGAP12Q8IWW6 846 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 SAMD12Q8N8I0 201 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 LRIG1Q96JA1 1093 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 VAPAQ9P0L0 249 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 ERVK-11Q9UQG0 969 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 SCN11AQ9UI33 1791 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 INMT-MINDY4F8WBC2 141 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 FAAHO00519 579 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 KIAA0513O60268 411 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 MRPL3P09001 348 aaKnown RBP13.44□□□□□ -0.26
CPSF1-212ENST00000616140 DCKP27707 260 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 RASGEF1BQ0VAM2 473 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 CTC1Q2NKJ3 1217 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 THOC7Q6I9Y2 204 aaKnown RBP13.44□□□□□ -0.26
CPSF1-212ENST00000616140 UGT2A3Q6UWM9 527 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF367Q7RTV3 350 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 OR2AJ1Q8NGZ0 328 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 TRUB1Q8WWH5 349 aaKnown RBP13.44□□□□□ -0.26
CPSF1-212ENST00000616140 APIPQ96GX9 242 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 LRR1Q96L50 414 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 BIRC8Q96P09 236 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 ARHGAP39Q9C0H5 1083 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 TAS2R10Q9NYW0 307 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF639Q9UID6 485 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 MRPS17Q9Y2R5 130 aaKnown RBP13.44□□□□□ -0.26
CPSF1-212ENST00000616140 EXOSC1Q9Y3B2 195 aaKnown RBP13.44□□□□□ -0.26
CPSF1-212ENST00000616140 M0QZQ0 153 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 ELAVL3Q14576 367 aaKnown RBP13.44□□□□□ -0.26
CPSF1-212ENST00000616140 FAM214AQ32MH5 1076 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF782Q6ZMW2 699 aaPredicted RBP13.44□□□□□ -0.26
CPSF1-212ENST00000616140 TSPYL5Q86VY4 417 aaPredicted RBP13.44□□□□□ -0.26
CPSF1-212ENST00000616140 GPALPP1Q8IXQ4 340 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 TMEM125Q96AQ2 219 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 RBCK1Q9BYM8 510 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 PCDHGB5Q9Y5G0 923 aa13.44□□□□□ -0.26
CPSF1-212ENST00000616140 CCL5P13501 91 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 TNFRSF1BP20333 461 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 OXTRP30559 389 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 SLC6A6P31641 620 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 CD70P32970 193 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 GCGRP47871 477 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 GRM2Q14416 872 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF267Q14586 743 aaPredicted RBP13.43□□□□□ -0.26
CPSF1-212ENST00000616140 CCBE1Q6UXH8 406 aaPredicted RBP13.43□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF551Q7Z340 670 aaPredicted RBP13.43□□□□□ -0.26
CPSF1-212ENST00000616140 SH3YL1Q96HL8 342 aaPredicted RBP13.43□□□□□ -0.26
CPSF1-212ENST00000616140 MNTQ99583 582 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 SLC6A15Q9H2J7 730 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 SEC61A2Q9H9S3 476 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 EXTL2Q9UBQ6 330 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 GJD2Q9UKL4 321 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 ZFR2Q9UPR6 939 aaKnown RBP13.43□□□□□ -0.26
CPSF1-212ENST00000616140 TMEM5Q9Y2B1 443 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 MAU2Q9Y6X3 613 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 TRAV6A0A075B6T7 132 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 TTC34A8MYJ7 566 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 I3L521 148 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 KHNYNO15037 678 aaKnown RBP13.43□□□□□ -0.26
CPSF1-212ENST00000616140 KDM4BO94953 1096 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 GSTM2P28161 218 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 NRIP1P48552 1158 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 NRG3P56975 720 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 ZXDBP98169 803 aa13.43□□□□□ -0.26
CPSF1-212ENST00000616140 CDKL1Q00532 357 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms