RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	NUPL2	O15504	423 aa	Known RBP	11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	KRT6A	P02538	564 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	KRT6B	P04259	564 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZNF12	P17014	697 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TNFRSF1B	P20333	461 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	GSTM2	P28161	218 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	AKT1	P31749	480 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PBX2	P40425	430 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	MVK	Q03426	396 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CDK5R2	Q13319	367 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CHRNA6	Q15825	494 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZXDC	Q2QGD7	858 aa	Predicted RBP	11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	INAVA	Q3KP66	663 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	AHSA2	Q719I0	299 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZNF551	Q7Z340	670 aa	Predicted RBP	11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ADCK1	Q86TW2	530 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	LRRTM4	Q86VH4	590 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	DCP2	Q8IU60	420 aa	Known RBP	11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TMC8	Q8IU68	726 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	OR14C36	Q8NHC7	312 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CHPT1	Q8WUD6	406 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PIH1D2	Q8WWB5	315 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	KCNJ9	Q92806	393 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	FOXJ1	Q92949	421 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZBTB18	Q99592	522 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	KCNN2	Q9H2S1	579 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	SIAE	Q9HAT2	523 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	DNAJB9	Q9UBS3	223 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CD84	Q9UIB8	345 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	WNT6	Q9Y6F9	365 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PMF1-BGLAP	U3KQ54	211 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	F5	P12259	2224 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ALPK3	Q96L96	1907 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CLDN25	C9JDP6	229 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ULK1	O75385	1050 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	MT-ND2	P03891	347 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	BMP4	P12644	408 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	HTD2	P86397	168 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CREM	Q03060	361 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CAMK1	Q14012	370 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	POM121L1P	Q3SYA9	428 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZNF805	Q5CZA5	627 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TTC23	Q5W5X9	447 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	DOK6	Q6PKX4	331 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZNF783	Q6ZMS7	281 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	FKBP9P1	Q75LS8	142 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	FAR1	Q8WVX9	515 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TRUB1	Q8WWH5	349 aa	Known RBP	11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	MYO19	Q96H55	970 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TPD52L3	Q96J77	140 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZNF382	Q96SR6	550 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PSD2	Q9BQI7	771 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ADGRE3	Q9BY15	652 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	UGT2B28	Q9BY64	529 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	SLCO3A1	Q9UIG8	710 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TMEFF2	Q9UIK5	374 aa	Predicted RBP	11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZNF229	Q9UJW7	825 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	DMRT1	Q9Y5R6	373 aa		11.12	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063		A6NL46	340 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063		A6NLC8	198 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CPSF4	O95639	269 aa	Known RBP	11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	VIP	P01282	170 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	BPI	P17213	487 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	NUP62	P37198	522 aa	Predicted RBP	11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	RGS19	P49795	217 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	NUDT6	P53370	316 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	OR4F3	Q6IEY1	312 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZDHHC21	Q8IVQ6	265 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	EID3	Q8N140	333 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	SORCS1	Q8WY21	1168 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	RORB	Q92753	470 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	MAP6	Q96JE9	813 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TMEM245	Q9H330	911 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	DHRS7	Q9Y394	339 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	GBF1	Q92538	1859 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZNF99	A8MXY4	864 aa	Predicted RBP	11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063		H0YIV9	168 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	GATC	O43716	136 aa	Known RBP	11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CRTAP	O75718	401 aa	Predicted RBP	11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PGLS	O95336	258 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	NTRK1	P04629	796 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	IL6	P05231	212 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ASGR2	P07307	311 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	IGFBP5	P24593	272 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	GRK3	P35626	688 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	LMAN2	Q12907	356 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	COQ5	Q5HYK3	327 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZNF648	Q5T619	568 aa	Predicted RBP	11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	SLC25A24	Q6NUK1	477 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	B3GNT8	Q7Z7M8	397 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	SLC22A16	Q86VW1	577 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZCCHC7	Q8N3Z6	543 aa	Known RBP	11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PRR18	Q8N4B5	295 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	LMNTD1	Q8N9Z9	388 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CLUHP3	Q96NS8	147 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TEX12	Q9BXU0	123 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CLPB	Q9H078	707 aa		11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	MTIF3	Q9H2K0	278 aa	Known RBP	11.11	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TDP1	Q9NUW8	608 aa		11.11	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms