RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 LGALS16A8MUM7 142 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 E7ENX8 843 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 MYO1CO00159 1063 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 TRAPPC6AO75865 159 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 ACSL3O95573 720 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 CRHP06850 196 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 CCDC166P0CW27 439 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 CHRM3P20309 590 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 CHMP24386 653 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 HRH2P25021 359 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 PPP2R1BP30154 601 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 HSD17B2P37059 387 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 PNLIPRP1P54315 467 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 CR1LQ2VPA4 569 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 DEFB134Q4QY38 66 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 FBLN7Q53RD9 439 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 CDKAL1Q5VV42 579 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 ANKRD34AQ69YU3 496 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 SCIMPQ6UWF3 145 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 DNAJC14Q6Y2X3 702 aaPredicted RBP14.7□□□□□ -0.06
VPS53-218ENST00000575207 CLEC17AQ6ZS10 378 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 ZNF740Q8NDX6 193 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 FAM216AQ8WUB2 273 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 SREK1Q8WXA9 508 aaKnown RBP14.7□□□□□ -0.06
VPS53-218ENST00000575207 PROX1Q92786 737 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 PANX2Q96RD6 677 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 ABCF3Q9NUQ8 709 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 AIPL1Q9NZN9 384 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 CNIH4Q9P003 139 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 MAPRE3Q9UPY8 281 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 CLDN16Q9Y5I7 305 aa14.7□□□□□ -0.06
VPS53-218ENST00000575207 AVILO75366 819 aa14.69□□□□□ -0.06
VPS53-218ENST00000575207 TRIM3O75382 744 aaPredicted RBP14.69□□□□□ -0.06
VPS53-218ENST00000575207 SLC35G6P0C7Q6 338 aa14.69□□□□□ -0.06
VPS53-218ENST00000575207 PECAM1P16284 738 aaPredicted RBP14.69□□□□□ -0.06
VPS53-218ENST00000575207 PPP3CBP16298 524 aa14.69□□□□□ -0.06
VPS53-218ENST00000575207 ALOX12P18054 663 aa14.69□□□□□ -0.06
VPS53-218ENST00000575207 USF1P22415 310 aaPredicted RBP14.69□□□□□ -0.06
VPS53-218ENST00000575207 DPP4P27487 766 aa14.69□□□□□ -0.06
VPS53-218ENST00000575207 NUDT6P53370 316 aa14.69□□□□□ -0.06
VPS53-218ENST00000575207 MPEG1Q2M385 716 aa14.69□□□□□ -0.06
VPS53-218ENST00000575207 BBS9Q3SYG4 887 aa14.69□□□□□ -0.06
VPS53-218ENST00000575207 AWAT1Q58HT5 328 aa14.69□□□□□ -0.06
VPS53-218ENST00000575207 ITPRIPL1Q6GPH6 555 aa14.69□□□□□ -0.06
VPS53-218ENST00000575207 SCUBE1Q8IWY4 988 aa14.69□□□□□ -0.06
VPS53-218ENST00000575207 PGM2Q96G03 612 aa14.69□□□□□ -0.06
VPS53-218ENST00000575207 ALS2CR12Q96Q35 445 aa14.69□□□□□ -0.06
VPS53-218ENST00000575207 OPN3Q9H1Y3 402 aaPredicted RBP14.69□□□□□ -0.06
VPS53-218ENST00000575207 ADAP2Q9NPF8 381 aa14.69□□□□□ -0.06
VPS53-218ENST00000575207 R3HDM2Q9Y2K5 976 aaKnown RBP14.69□□□□□ -0.06
VPS53-218ENST00000575207 ZNF839A8K0R7 811 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 GFYI3L273 518 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 SMAPO00193 183 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 EIF3FO00303 357 aaPredicted RBP14.68□□□□□ -0.06
VPS53-218ENST00000575207 B3GALT4O96024 378 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 CD8AP01732 235 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 TBXA2RP21731 343 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 COILP38432 576 aaPredicted RBP14.68□□□□□ -0.06
VPS53-218ENST00000575207 RNF4P78317 190 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 KLHL30Q0D2K2 578 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 FAPQ12884 760 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 PGGHGQ32M88 737 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 PIGGQ5H8A4 983 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 CT47A1Q5JQC4 288 aaPredicted RBP14.68□□□□□ -0.06
VPS53-218ENST00000575207 E4F1Q66K89 784 aaPredicted RBP14.68□□□□□ -0.06
VPS53-218ENST00000575207 CAPN13Q6MZZ7 669 aaPredicted RBP14.68□□□□□ -0.06
VPS53-218ENST00000575207 VWA1Q6PCB0 445 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 PPFIBP2Q8ND30 876 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 OR5L2Q8NGL0 311 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 TBL1YQ9BQ87 522 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 DOHHQ9BU89 302 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 G6PC3Q9BUM1 346 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 TRAF4Q9BUZ4 470 aaPredicted RBP14.68□□□□□ -0.06
VPS53-218ENST00000575207 MANSC1Q9H8J5 431 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 FETUBQ9UGM5 382 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 SH2B3Q9UQQ2 575 aa14.68□□□□□ -0.06
VPS53-218ENST00000575207 CHCHD2Q9Y6H1 151 aaPredicted RBP14.68□□□□□ -0.06
VPS53-218ENST00000575207 A0A1W2PP18 115 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 CCDC162PA2VCL2 907 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 PSMD12O00232 456 aaPredicted RBP14.67□□□□□ -0.06
VPS53-218ENST00000575207 LCMT2O60294 686 aaKnown RBP14.67□□□□□ -0.06
VPS53-218ENST00000575207 ACTL6AO96019 429 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 RNH1P13489 461 aaKnown RBP14.67□□□□□ -0.06
VPS53-218ENST00000575207 PTPN6P29350 595 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 GMPRP36959 345 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 KCNJ5P48544 419 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 NAGLUP54802 743 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 PRPSAP1Q14558 356 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 OCLNQ16625 522 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 THEMIS2Q5TEJ8 643 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 LYPD8Q6UX82 237 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 LRRC56Q8IYG6 542 aaPredicted RBP14.67□□□□□ -0.06
VPS53-218ENST00000575207 TMEM132CQ8N3T6 1108 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 BANPQ8N9N5 519 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 RAB3IL1Q8TBN0 382 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 ZNF480Q8WV37 535 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 MRFAP1L1Q96HT8 127 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 ZNF597Q96LX8 424 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 KRT12Q99456 494 aa14.67□□□□□ -0.06
VPS53-218ENST00000575207 DTX4Q9Y2E6 619 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms