RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 TIMM22Q9Y584 194 aa19.42■□□□□ 0.7
VPS53-210ENST00000571456 CHST10O43529 356 aa19.41■□□□□ 0.7
VPS53-210ENST00000571456 RGS14O43566 566 aa19.41■□□□□ 0.7
VPS53-210ENST00000571456 RSL1D1O76021 490 aaKnown RBP19.41■□□□□ 0.7
VPS53-210ENST00000571456 F8A1P23610 371 aa19.41■□□□□ 0.7
VPS53-210ENST00000571456 HK2P52789 917 aa19.41■□□□□ 0.7
VPS53-210ENST00000571456 FOXA1P55317 472 aa19.41■□□□□ 0.7
VPS53-210ENST00000571456 RIPPLY3P57055 190 aa19.41■□□□□ 0.7
VPS53-210ENST00000571456 RAB38P57729 211 aa19.41■□□□□ 0.7
VPS53-210ENST00000571456 BST1Q10588 318 aa19.41■□□□□ 0.7
VPS53-210ENST00000571456 ABRAXAS2Q15018 415 aa19.41■□□□□ 0.7
VPS53-210ENST00000571456 UGT8Q16880 541 aa19.41■□□□□ 0.7
VPS53-210ENST00000571456 IMPG1Q17R60 797 aa19.41■□□□□ 0.7
VPS53-210ENST00000571456 FAM76AQ8TAV0 307 aa19.41■□□□□ 0.7
VPS53-210ENST00000571456 KCNA7Q96RP8 456 aa19.41■□□□□ 0.7
VPS53-210ENST00000571456 FARSBQ9NSD9 589 aaKnown RBP19.41■□□□□ 0.7
VPS53-210ENST00000571456 HCN3Q9P1Z3 774 aa19.41■□□□□ 0.7
VPS53-210ENST00000571456 DNAJC15Q9Y5T4 150 aa19.41■□□□□ 0.7
VPS53-210ENST00000571456 ARHGAP10A1A4S6 786 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 C4orf51C9J302 202 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 SLCO1B7G3V0H7 640 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 CLDN4O14493 209 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 ETHE1O95571 254 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 FHP07954 510 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 CHN1P15882 459 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 MMP11P24347 488 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 TLX1P31314 330 aaPredicted RBP19.4■□□□□ 0.7
VPS53-210ENST00000571456 BSGP35613 385 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 CD97P48960 835 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 RPL14P50914 215 aaKnown RBP19.4■□□□□ 0.7
VPS53-210ENST00000571456 TRA2BP62995 288 aaKnown RBP19.4■□□□□ 0.7
VPS53-210ENST00000571456 GALNT18Q6P9A2 607 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 CYP20A1Q6UW02 462 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 ZC3H7AQ8IWR0 971 aaKnown RBP19.4■□□□□ 0.7
VPS53-210ENST00000571456 CA13Q8N1Q1 262 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 DTWD1Q8N5C7 304 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 C9orf43Q8TAL5 461 aaPredicted RBP19.4■□□□□ 0.7
VPS53-210ENST00000571456 RNF31Q96EP0 1072 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 ZNF717Q9BY31 904 aaPredicted RBP19.4■□□□□ 0.7
VPS53-210ENST00000571456 PRDM9Q9NQV7 894 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 ZNF71Q9NQZ8 489 aaPredicted RBP19.4■□□□□ 0.7
VPS53-210ENST00000571456 WBP11Q9Y2W2 641 aaKnown RBP19.4■□□□□ 0.7
VPS53-210ENST00000571456 MMACHCQ9Y4U1 282 aa19.4■□□□□ 0.7
VPS53-210ENST00000571456 ZNF860A6NHJ4 632 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 SNNO75324 88 aaPredicted RBP19.39■□□□□ 0.69
VPS53-210ENST00000571456 CERS1P27544 350 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 LIM2P55344 173 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 MAT1AQ00266 395 aaKnown RBP19.39■□□□□ 0.69
VPS53-210ENST00000571456 KLC1Q07866 573 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 ACSM2AQ08AH3 577 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 BIKQ13323 160 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 UGT3A2Q3SY77 523 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 VWA2Q5GFL6 755 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 TCHHL1Q5QJ38 904 aaPredicted RBP19.39■□□□□ 0.69
VPS53-210ENST00000571456 ACSM2BQ68CK6 577 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 CLEC6AQ6EIG7 209 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 QSOX2Q6ZRP7 698 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 ZNF595Q8IYB9 648 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 RNF175Q8N4F7 328 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 PLPP5Q8NEB5 264 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 LRRC8CQ8TDW0 803 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 TWIST2Q8WVJ9 160 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 METTL21AQ8WXB1 218 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 CRB3Q9BUF7 120 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 ACPTQ9BZG2 426 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 SHCBP1LQ9BZQ2 653 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 C19orf25Q9UFG5 118 aaPredicted RBP19.39■□□□□ 0.69
VPS53-210ENST00000571456 TMED5Q9Y3A6 229 aa19.39■□□□□ 0.69
VPS53-210ENST00000571456 A0A0A6YYD5 115 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 CNOT3O75175 753 aaKnown RBP19.38■□□□□ 0.69
VPS53-210ENST00000571456 MYO1DO94832 1006 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 AGFG2O95081 481 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 HEXBP07686 556 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 PPP2R1BP30154 601 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 BUD31P41223 144 aaPredicted RBP19.38■□□□□ 0.69
VPS53-210ENST00000571456 HTR6P50406 440 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 EMP2P54851 167 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 HSD17B7P56937 341 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 TBL3Q12788 808 aaKnown RBP19.38■□□□□ 0.69
VPS53-210ENST00000571456 SLAMF1Q13291 335 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 ESPL1Q14674 2120 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 ZNF793Q6ZN11 406 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 COMMD6Q7Z4G1 85 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 GPR180Q86V85 440 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 LRRC34Q8IZ02 419 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 OR5T3Q8NGG3 340 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 CHTF18Q8WVB6 975 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 ZNF75CPQ92670 426 aaPredicted RBP19.38■□□□□ 0.69
VPS53-210ENST00000571456 PEX11GQ96HA9 241 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 WDR41Q9HAD4 459 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 TNFRSF12AQ9NP84 129 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 RIC8BQ9NVN3 520 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 ZDHHC2Q9UIJ5 367 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 MCM8Q9UJA3 840 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 C3orf18Q9UK00 162 aa19.38■□□□□ 0.69
VPS53-210ENST00000571456 PRRC2CQ9Y520 2896 aaKnown RBP19.38■□□□□ 0.69
VPS53-210ENST00000571456 A0A0G2JN53 185 aa19.37■□□□□ 0.69
VPS53-210ENST00000571456 A0A1W2PQ72 361 aa19.37■□□□□ 0.69
VPS53-210ENST00000571456 IDSB3KWA1 339 aa19.37■□□□□ 0.69
VPS53-210ENST00000571456 SAP18O00422 153 aaKnown RBP19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms