RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 CCND1P24385 295 aa16.53■□□□□ 0.24
CLK3-227ENST00000570296 RAB8AP61006 207 aa16.53■□□□□ 0.24
CLK3-227ENST00000570296 EEF1A1P68104 462 aaKnown RBP16.53■□□□□ 0.24
CLK3-227ENST00000570296 RCAN2Q14206 197 aa16.53■□□□□ 0.24
CLK3-227ENST00000570296 MPEG1Q2M385 716 aa16.53■□□□□ 0.24
CLK3-227ENST00000570296 EEF1A1P5Q5VTE0 462 aa16.53■□□□□ 0.24
CLK3-227ENST00000570296 TBC1D19Q8N5T2 526 aa16.53■□□□□ 0.24
CLK3-227ENST00000570296 SREK1Q8WXA9 508 aaKnown RBP16.53■□□□□ 0.24
CLK3-227ENST00000570296 MED18Q9BUE0 208 aa16.53■□□□□ 0.24
CLK3-227ENST00000570296 LRTM1Q9HBL6 345 aa16.53■□□□□ 0.24
CLK3-227ENST00000570296 PROK2Q9HC23 129 aa16.53■□□□□ 0.24
CLK3-227ENST00000570296 PRTFDC1Q9NRG1 225 aa16.53■□□□□ 0.24
CLK3-227ENST00000570296 CNIH4Q9P003 139 aa16.53■□□□□ 0.24
CLK3-227ENST00000570296 ZNF148Q9UQR1 794 aa16.53■□□□□ 0.24
CLK3-227ENST00000570296 E5RI56 91 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 PFDN6O15212 129 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 RCBTB2O95199 551 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 C1QAP02745 245 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 LOXP28300 417 aaPredicted RBP16.52■□□□□ 0.24
CLK3-227ENST00000570296 CCR8P51685 355 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 HADHBP55084 474 aaKnown RBP16.52■□□□□ 0.24
CLK3-227ENST00000570296 SLC13A2Q13183 592 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 PIGGQ5H8A4 983 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 PRAMEF20Q5VT98 475 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 LCTLQ6UWM7 567 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 SDCCAG8Q86SQ7 713 aaPredicted RBP16.52■□□□□ 0.24
CLK3-227ENST00000570296 OTUD6BQ8N6M0 293 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 PRELID2Q8N945 189 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 TC2NQ8N9U0 490 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 OR4K1Q8NGD4 311 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 OR14A16Q8NHC5 309 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 ZPLD1Q8TCW7 415 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 WDYHV1Q96HA8 205 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 JSRP1Q96MG2 331 aaPredicted RBP16.52■□□□□ 0.24
CLK3-227ENST00000570296 TM9SF2Q99805 663 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 PIGQQ9BRB3 760 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 PLA2G12AQ9BZM1 189 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 ACBD3Q9H3P7 528 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 CHRAC1Q9NRG0 131 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 TREX1Q9NSU2 369 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 PSD3Q9NYI0 1048 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 ZFP69BQ9UJL9 534 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 PACSIN3Q9UKS6 424 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 INTUQ9ULD6 942 aa16.52■□□□□ 0.24
CLK3-227ENST00000570296 TENM1Q9UKZ4 2725 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 TJP3O95049 919 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 SMIM10L1P0DMW3 83 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 ENO3P13929 434 aaPredicted RBP16.51■□□□□ 0.23
CLK3-227ENST00000570296 AHRP35869 848 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 CPOXP36551 454 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 GRIA1P42261 906 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 CLCN7P51798 805 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 MRNIPQ6NTE8 343 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 BTLAQ7Z6A9 289 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 CAND1Q86VP6 1230 aaKnown RBP16.51■□□□□ 0.23
CLK3-227ENST00000570296 DND1Q8IYX4 353 aaKnown RBP16.51■□□□□ 0.23
CLK3-227ENST00000570296 PTPMT1Q8WUK0 201 aaPredicted RBP16.51■□□□□ 0.23
CLK3-227ENST00000570296 SPACA9Q96E40 222 aaPredicted RBP16.51■□□□□ 0.23
CLK3-227ENST00000570296 SMIM10Q96HG1 83 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 TCF12Q99081 682 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 HAUS8Q9BT25 410 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 BEX2Q9BXY8 128 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 UGT2B28Q9BY64 529 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 OR8D2Q9GZM6 311 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 TMEM160Q9NX00 188 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 KLHL42Q9P2K6 505 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 IKBKGQ9Y6K9 419 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 MED12Q93074 2177 aa16.51■□□□□ 0.23
CLK3-227ENST00000570296 IFNA16P05015 189 aa16.5■□□□□ 0.23
CLK3-227ENST00000570296 HPNP05981 417 aa16.5■□□□□ 0.23
CLK3-227ENST00000570296 IDUAP35475 653 aa16.5■□□□□ 0.23
CLK3-227ENST00000570296 GDF10P55107 478 aa16.5■□□□□ 0.23
CLK3-227ENST00000570296 CCZ1BP86790 482 aa16.5■□□□□ 0.23
CLK3-227ENST00000570296 CCZ1P86791 482 aaPredicted RBP16.5■□□□□ 0.23
CLK3-227ENST00000570296 GAB1Q13480 694 aa16.5■□□□□ 0.23
CLK3-227ENST00000570296 PCID2Q5JVF3 399 aa16.5■□□□□ 0.23
CLK3-227ENST00000570296 UBE2R2Q712K3 238 aaPredicted RBP16.5■□□□□ 0.23
CLK3-227ENST00000570296 GPATCH11Q8N954 259 aa16.5■□□□□ 0.23
CLK3-227ENST00000570296 GABPB2Q8TAK5 448 aaPredicted RBP16.5■□□□□ 0.23
CLK3-227ENST00000570296 SLC22A8Q8TCC7 542 aa16.5■□□□□ 0.23
CLK3-227ENST00000570296 ZNF597Q96LX8 424 aa16.5■□□□□ 0.23
CLK3-227ENST00000570296 DOHHQ9BU89 302 aa16.5■□□□□ 0.23
CLK3-227ENST00000570296 SGPP1Q9BX95 441 aa16.5■□□□□ 0.23
CLK3-227ENST00000570296 ANGPTL4Q9BY76 406 aa16.5■□□□□ 0.23
CLK3-227ENST00000570296 LPAR3Q9UBY5 353 aa16.5■□□□□ 0.23
CLK3-227ENST00000570296 MRPS33Q9Y291 106 aaKnown RBP16.5■□□□□ 0.23
CLK3-227ENST00000570296 CHCHD2Q9Y6H1 151 aaPredicted RBP16.5■□□□□ 0.23
CLK3-227ENST00000570296 MSTNO14793 375 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 SNPHO15079 494 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 NRDCO43847 1150 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 TRAPPC6AO75865 159 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 CYP4B1P13584 511 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 NPPBP16860 134 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 SOX18P35713 384 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 HNF4AP41235 474 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 SCTRP47872 440 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 CDK9P50750 372 aaKnown RBP16.49■□□□□ 0.23
CLK3-227ENST00000570296 FAM27E3Q08E93 113 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 C6orf52Q5T4I8 152 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 AGTRAPQ6RW13 159 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms