RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 GTF2H2Q13888 395 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 PCBP2Q15366 365 aaKnown RBP eCLIP19.34■□□□□ 0.69
CLN3-219ENST00000565778 OR4C11Q6IEV9 310 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 GTF2H2CQ6P1K8 395 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 TAOK1Q7L7X3 1001 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 PLD6Q8N2A8 252 aaKnown RBP19.34■□□□□ 0.69
CLN3-219ENST00000565778 RNF175Q8N4F7 328 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 TMEM156Q8N614 296 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 HUS1BQ8NHY5 278 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 RELTQ969Z4 430 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 RGMAQ96B86 450 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 SCYL1Q96KG9 808 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 MTERF1Q99551 399 aaKnown RBP19.34■□□□□ 0.69
CLN3-219ENST00000565778 CENPKQ9BS16 269 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 IPPKQ9H8X2 491 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 ZNF358Q9NW07 568 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 KIF2AO00139 706 aaPredicted RBP19.33■□□□□ 0.68
CLN3-219ENST00000565778 KLK8O60259 260 aa19.33■□□□□ 0.68
CLN3-219ENST00000565778 ZG16O60844 167 aa19.33■□□□□ 0.68
CLN3-219ENST00000565778 LDB3O75112 727 aa19.33■□□□□ 0.68
CLN3-219ENST00000565778 KRT38O76015 456 aa19.33■□□□□ 0.68
CLN3-219ENST00000565778 ZFAND5O76080 213 aa19.33■□□□□ 0.68
CLN3-219ENST00000565778 SIX3O95343 332 aaPredicted RBP19.33■□□□□ 0.68
CLN3-219ENST00000565778 RBP1P09455 135 aa19.33■□□□□ 0.68
CLN3-219ENST00000565778 TRHRP34981 398 aaPredicted RBP19.33■□□□□ 0.68
CLN3-219ENST00000565778 PIK3CBP42338 1070 aa19.33■□□□□ 0.68
CLN3-219ENST00000565778 SLAMF1Q13291 335 aa19.33■□□□□ 0.68
CLN3-219ENST00000565778 ELAVL1Q15717 326 aaKnown RBP19.33■□□□□ 0.68
CLN3-219ENST00000565778 KRTCAP3Q53RY4 240 aa19.33■□□□□ 0.68
CLN3-219ENST00000565778 GOLGA7Q7Z5G4 137 aa19.33■□□□□ 0.68
CLN3-219ENST00000565778 KIF18AQ8NI77 898 aa19.33■□□□□ 0.68
CLN3-219ENST00000565778 DAZLQ92904 295 aaKnown RBP19.33■□□□□ 0.68
CLN3-219ENST00000565778 ATP6V1E2Q96A05 226 aa19.33■□□□□ 0.68
CLN3-219ENST00000565778 PHF21BQ96EK2 531 aa19.33■□□□□ 0.68
CLN3-219ENST00000565778 PAFAH2Q99487 392 aa19.33■□□□□ 0.68
CLN3-219ENST00000565778 TRIM45Q9H8W5 580 aaPredicted RBP19.33■□□□□ 0.68
CLN3-219ENST00000565778 VTI1BQ9UEU0 232 aa19.33■□□□□ 0.68
CLN3-219ENST00000565778 PPIEQ9UNP9 301 aaKnown RBP19.33■□□□□ 0.68
CLN3-219ENST00000565778 POLEQ07864 2286 aa19.32■□□□□ 0.68
CLN3-219ENST00000565778 SVILO95425 2214 aa19.32■□□□□ 0.68
CLN3-219ENST00000565778 ASPDHA6ND91 283 aa19.32■□□□□ 0.68
CLN3-219ENST00000565778 NPIPA5E9PKD4 350 aa19.32■□□□□ 0.68
CLN3-219ENST00000565778 ITGA10O75578 1167 aa19.32■□□□□ 0.68
CLN3-219ENST00000565778 PTX3P26022 381 aaPredicted RBP19.32■□□□□ 0.68
CLN3-219ENST00000565778 ARL1P40616 181 aaPredicted RBP19.32■□□□□ 0.68
CLN3-219ENST00000565778 PIK3CGP48736 1102 aa19.32■□□□□ 0.68
CLN3-219ENST00000565778 GPR143P51810 404 aa19.32■□□□□ 0.68
CLN3-219ENST00000565778 PHEXP78562 749 aa19.32■□□□□ 0.68
CLN3-219ENST00000565778 SERTAD2Q14140 314 aa19.32■□□□□ 0.68
CLN3-219ENST00000565778 CPSF6Q16630 551 aaKnown RBP eCLIP19.32■□□□□ 0.68
CLN3-219ENST00000565778 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.32■□□□□ 0.68
CLN3-219ENST00000565778 TECRLQ5HYJ1 363 aa19.32■□□□□ 0.68
CLN3-219ENST00000565778 ARMC10Q8N2F6 343 aa19.32■□□□□ 0.68
CLN3-219ENST00000565778 REPS1Q96D71 796 aa19.32■□□□□ 0.68
CLN3-219ENST00000565778 SORBS1Q9BX66 1292 aaKnown RBP19.32■□□□□ 0.68
CLN3-219ENST00000565778 TSPAN10Q9H1Z9 355 aaPredicted RBP19.32■□□□□ 0.68
CLN3-219ENST00000565778 LIN28AQ9H9Z2 209 aaKnown RBP19.32■□□□□ 0.68
CLN3-219ENST00000565778 ZNF223Q9UK11 482 aaPredicted RBP19.32■□□□□ 0.68
CLN3-219ENST00000565778 NPIPA1Q9UND3 350 aa19.32■□□□□ 0.68
CLN3-219ENST00000565778 ZGRF1Q86YA3 2104 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 A0A087WUV0 522 aaPredicted RBP19.31■□□□□ 0.68
CLN3-219ENST00000565778 CCL21O00585 134 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 NME2P1O60361 137 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 UGDHO60701 494 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 NME2P22392 152 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 CASP6P55212 293 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 RPS13P62277 151 aaKnown RBP19.31■□□□□ 0.68
CLN3-219ENST00000565778 ID2Q02363 134 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 ZRSR2Q15696 482 aaKnown RBP19.31■□□□□ 0.68
CLN3-219ENST00000565778 METTL2BQ6P1Q9 378 aaKnown RBP19.31■□□□□ 0.68
CLN3-219ENST00000565778 ZNF227Q86WZ6 799 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 PTGR2Q8N8N7 351 aaPredicted RBP19.31■□□□□ 0.68
CLN3-219ENST00000565778 MORN4Q8NDC4 146 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 C7orf57Q8NEG2 295 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 PTPMT1Q8WUK0 201 aaPredicted RBP19.31■□□□□ 0.68
CLN3-219ENST00000565778 FRMD6Q96NE9 622 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 DMRT3Q9NQL9 472 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 MS4A12Q9NXJ0 267 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 SH3BGRL2Q9UJC5 107 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 YARS2Q9Y2Z4 477 aaKnown RBP19.31■□□□□ 0.68
CLN3-219ENST00000565778 RNF11Q9Y3C5 154 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 TSC22D4Q9Y3Q8 395 aa19.31■□□□□ 0.68
CLN3-219ENST00000565778 SPTAN1Q13813 2472 aaKnown RBP19.3■□□□□ 0.68
CLN3-219ENST00000565778 TRIM49D1C9J1S8 452 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 H0YIV9 168 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 KLRC4-KLRK1H3BQV0 150 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 PRKNO60260 465 aaPredicted RBP19.3■□□□□ 0.68
CLN3-219ENST00000565778 SCELO95171 688 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 CLDN9O95484 217 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 COL6A2P12110 1019 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 CNTFP26441 200 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 ECHS1P30084 290 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 TLX1P31314 330 aaPredicted RBP19.3■□□□□ 0.68
CLN3-219ENST00000565778 SSR4P51571 173 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 HSDL2Q6YN16 418 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 C16orf47Q6ZP98 133 aaPredicted RBP19.3■□□□□ 0.68
CLN3-219ENST00000565778 GPR180Q86V85 440 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 OR4N5Q8IXE1 308 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 CYP4Z2PQ8N1L4 340 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 CEP112Q8N8E3 955 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms