RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 NEIL3Q8TAT5 605 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 CD200R1Q8TD46 325 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 KCNJ9Q92806 393 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 DAZLQ92904 295 aaKnown RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 PYCR2Q96C36 320 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 FAR2Q96K12 515 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 HIST1H2AHQ96KK5 128 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 CALR3Q96L12 384 aaKnown RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 JSRP1Q96MG2 331 aaPredicted RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 DACH2Q96NX9 599 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 SECISBP2Q96T21 854 aaKnown RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 PIP5K1AQ99755 562 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 HIST1H2AJQ99878 128 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 H2AFJQ9BTM1 129 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 KIFC1Q9BW19 673 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 SGPP1Q9BX95 441 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 KLHL31Q9H511 634 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 PARVBQ9HBI1 364 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 ZFP64Q9NPA5 681 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 FBXO6Q9NRD1 293 aaPredicted RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 INTS10Q9NVR2 710 aaKnown RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 KLHL42Q9P2K6 505 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 ADAMTS6Q9UKP5 1117 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 BOKQ9UMX3 212 aaPredicted RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 PACSIN2Q9UNF0 486 aaPredicted RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 PDE10AQ9Y233 779 aa6.75□□□□□ -1.33
VPS4A-203ENST00000564399 MRPS33Q9Y291 106 aaKnown RBP6.75□□□□□ -1.33
VPS4A-203ENST00000564399 A0A0G2JN53 185 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 GRID2IPA4D2P6 1211 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 SH3D21A4FU49 640 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 TGFBR3LH3BV60 316 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 ZNF354AO60765 605 aaPredicted RBP6.74□□□□□ -1.33
VPS4A-203ENST00000564399 ERN1O75460 977 aaKnown RBP6.74□□□□□ -1.33
VPS4A-203ENST00000564399 IPO7O95373 1038 aaKnown RBP6.74□□□□□ -1.33
VPS4A-203ENST00000564399 CNOT4O95628 575 aaKnown RBP6.74□□□□□ -1.33
VPS4A-203ENST00000564399 IFNA2P01563 188 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 C8GP07360 202 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 ZSCAN5DPP0CG00 497 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 CTSSP25774 331 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 GDF1P27539 372 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 OPRM1P35372 400 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 CPA2P48052 419 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 RGS4P49798 205 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 HNRNPFP52597 415 aaKnown RBP6.74□□□□□ -1.33
VPS4A-203ENST00000564399 RNF4P78317 190 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 ASPHQ12797 758 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 CTBP1Q13363 440 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 RBBP5Q15291 538 aaKnown RBP6.74□□□□□ -1.33
VPS4A-203ENST00000564399 OASLQ15646 514 aaKnown RBP6.74□□□□□ -1.33
VPS4A-203ENST00000564399 PRAMEF20Q5VT98 475 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 KIAA0930Q6ICG6 404 aaPredicted RBP6.74□□□□□ -1.33
VPS4A-203ENST00000564399 LRRC8EQ6NSJ5 796 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 CASC4Q6P4E1 433 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 ZNF549Q6P9A3 640 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 POMZP3Q6PJE2 187 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 STRA8Q7Z7C7 330 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 PHC2Q8IXK0 858 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 CCDC170Q8IYT3 715 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 ZNF321PQ8N8H1 164 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 FAM47BQ8NA70 645 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 MORN4Q8NDC4 146 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 C1orf54Q8WWF1 131 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 SMPDL3BQ92485 455 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 ISL2Q96A47 359 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 RUNDC3BQ96NL0 473 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 TRIB1Q96RU8 372 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 CCL19Q99731 98 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 RBM24Q9BX46 236 aaKnown RBP6.74□□□□□ -1.33
VPS4A-203ENST00000564399 TSGA10Q9BZW7 698 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 SPNS1Q9H2V7 528 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 OCEL1Q9H607 264 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 ZNF703Q9H7S9 590 aaPredicted RBP6.74□□□□□ -1.33
VPS4A-203ENST00000564399 UBTD1Q9HAC8 227 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 ACKR4Q9NPB9 350 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 EIF2B3Q9NR50 452 aaKnown RBP6.74□□□□□ -1.33
VPS4A-203ENST00000564399 HOMER3Q9NSC5 361 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 TRMT6Q9UJA5 497 aaKnown RBP6.74□□□□□ -1.33
VPS4A-203ENST00000564399 SOX13Q9UN79 622 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 CAMK2AQ9UQM7 478 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 MED16Q9Y2X0 877 aa6.74□□□□□ -1.33
VPS4A-203ENST00000564399 MBD3L4A6NDZ8 208 aaPredicted RBP6.73□□□□□ -1.33
VPS4A-203ENST00000564399 MBD3L5A6NJ08 208 aaPredicted RBP6.73□□□□□ -1.33
VPS4A-203ENST00000564399 MIF4GDA9UHW6 222 aaKnown RBP6.73□□□□□ -1.33
VPS4A-203ENST00000564399 C17orf105B2RV13 164 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 C4orf51C9J302 202 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 EIF3FO00303 357 aaPredicted RBP6.73□□□□□ -1.33
VPS4A-203ENST00000564399 B3GALT2O43825 422 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 TRAPPC6AO75865 159 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 FTCDO95954 541 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 SERPINA6P08185 405 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 SMIM10L1P0DMW3 83 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 FPR1P21462 350 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 TERF1P54274 439 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 RAB38P57729 211 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 STXBP1P61764 594 aaKnown RBP6.73□□□□□ -1.33
VPS4A-203ENST00000564399 CRYZQ08257 329 aaKnown RBP6.73□□□□□ -1.33
VPS4A-203ENST00000564399 TBL3Q12788 808 aaKnown RBP6.73□□□□□ -1.33
VPS4A-203ENST00000564399 STX4Q12846 297 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 DUSP8Q13202 625 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 SP140Q13342 867 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms