RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 CPA2P48052 419 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 OLR1P78380 273 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 MC2RQ01718 297 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 ART3Q13508 389 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 MAPKAPK3Q16644 382 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 UGT8Q16880 541 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 VPS26BQ4G0F5 336 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 DNAL1Q4LDG9 190 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 C6orf10Q5SRN2 563 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 DCAF12Q5T6F0 453 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 FOXR1Q6PIV2 292 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 C16orf89Q6UX73 402 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 RAB11FIP2Q7L804 512 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 PRSS41Q7RTY9 318 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 FUNDC1Q8IVP5 155 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 DSELQ8IZU8 1212 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 CA13Q8N1Q1 262 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 BMPERQ8N8U9 685 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 ZFP28Q8NHY6 868 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 ROPN1LQ96C74 230 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 KLHL29Q96CT2 875 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 RCN3Q96D15 328 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 CLIP3Q96DZ5 547 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 MAPKAP1Q9BPZ7 522 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 ASPSCR1Q9BZE9 553 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 EFCAB1Q9HAE3 211 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 NEUROD4Q9HD90 331 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 GID8Q9NWU2 228 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 OCIAD1Q9NX40 245 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 SLC39A1Q9NY26 324 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 HCN3Q9P1Z3 774 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 UTS2RQ9UKP6 389 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 ATG4BQ9Y4P1 393 aa12.12□□□□□ -0.47
CLK3-214ENST00000564096 C15orf38-AP3S2A0A0A6YYH1 394 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 SYNDIG1LA6NDD5 238 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 AGRPO00253 132 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 RNASET2O00584 256 aaKnown RBP12.11□□□□□ -0.47
CLK3-214ENST00000564096 AIM2O14862 343 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 PLD2O14939 933 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 PROM1O43490 865 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 FOXS1O43638 330 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 HYAL3O43820 417 aaPredicted RBP12.11□□□□□ -0.47
CLK3-214ENST00000564096 DKK1O94907 266 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 KCNH1O95259 989 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 KRT16P08779 473 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 IL10P22301 178 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 NFYCQ13952 458 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 TRMT5Q32P41 509 aaKnown RBP12.11□□□□□ -0.47
CLK3-214ENST00000564096 LACTB2Q53H82 288 aaPredicted RBP12.11□□□□□ -0.47
CLK3-214ENST00000564096 TMEM164Q5U3C3 297 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 SLC48A1Q6P1K1 146 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 ARPINQ7Z6K5 226 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 DHDDSQ86SQ9 333 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 TMPRSS12Q86WS5 348 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 CACTIN-AS1Q8N1I8 211 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 METTL27Q8N6F8 245 aaPredicted RBP12.11□□□□□ -0.47
CLK3-214ENST00000564096 AMER3Q8N944 861 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 FAM47BQ8NA70 645 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 C7orf57Q8NEG2 295 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 OR7A2PQ8NGA2 310 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 WDR36Q8NI36 951 aaKnown RBP12.11□□□□□ -0.47
CLK3-214ENST00000564096 COL26A1Q96A83 441 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 VPS33AQ96AX1 596 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 EXOSC8Q96B26 276 aaKnown RBP12.11□□□□□ -0.47
CLK3-214ENST00000564096 ZBED6CLQ96FA7 236 aaPredicted RBP12.11□□□□□ -0.47
CLK3-214ENST00000564096 ITCHQ96J02 903 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 SLC45A3Q96JT2 553 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 OR1F2PQ96R84 312 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 DPH2Q9BQC3 489 aaPredicted RBP12.11□□□□□ -0.47
CLK3-214ENST00000564096 DDA1Q9BW61 102 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 RPF2Q9H7B2 306 aaKnown RBP12.11□□□□□ -0.47
CLK3-214ENST00000564096 ZNF304Q9HCX3 659 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 DHCR7Q9UBM7 475 aaKnown RBP12.11□□□□□ -0.47
CLK3-214ENST00000564096 PCDHGB4Q9UN71 923 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 MAP4K5Q9Y4K4 846 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 ZNF780BQ9Y6R6 833 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 MYO15AQ9UKN7 3530 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 LAMA1P25391 3075 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 DNAH14Q0VDD8 3507 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 RP1P56715 2156 aa12.11□□□□□ -0.47
CLK3-214ENST00000564096 ASCC3Q8N3C0 2202 aaKnown RBP12.1□□□□□ -0.47
CLK3-214ENST00000564096 A0A1W2PR48 441 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 CLDN4O14493 209 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 CHST10O43529 356 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 ANP32DO95626 131 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 NPPAP01160 153 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 AGXTP21549 392 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 ZFP36L2P47974 494 aaKnown RBP12.1□□□□□ -0.47
CLK3-214ENST00000564096 DGKQP52824 942 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 MC1RQ01726 317 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 ABHD18Q0P651 414 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 RUNX2Q13950 521 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 OR4F3Q6IEY1 312 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 ANKRD26P1Q6NSI1 321 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 PWWP2BQ6NUJ5 590 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 HACD2Q6Y1H2 254 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 ZNF595Q8IYB9 648 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 GALNT15Q8N3T1 639 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 DPP10Q8N608 796 aa12.1□□□□□ -0.47
CLK3-214ENST00000564096 TRIML2Q8N7C3 387 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms