RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 AGPAT4Q9NRZ5 378 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 NMRK1Q9NWW6 199 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 KCMF1Q9P0J7 381 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 LUZP4Q9P127 313 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 SNX6Q9UNH7 406 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 COPG1Q9Y678 874 aaKnown RBP12.55□□□□□ -0.4
CLK3-213ENST00000563842 A0A1W2PPM1 405 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 CCDC151A5D8V7 595 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 SMIM23A6NLE4 172 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 PYCARD-AS1I3L0S3 204 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 SAP18O00422 153 aaKnown RBP12.54□□□□□ -0.4
CLK3-213ENST00000563842 RTCAO00442 366 aaKnown RBP12.54□□□□□ -0.4
CLK3-213ENST00000563842 PLPP1O14494 284 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 DLX3O60479 287 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 SEMA3DO95025 777 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 TUBBP07437 444 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 NUDT17P0C025 328 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 PPP2R1BP30154 601 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 BUD31P41223 144 aaPredicted RBP12.54□□□□□ -0.4
CLK3-213ENST00000563842 PRKAA2P54646 552 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 IFFO1Q0D2I5 559 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 SLAMF1Q13291 335 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 IGFBP7Q16270 282 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 ACER2Q5QJU3 275 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 ZNF678Q5SXM1 525 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 CYP20A1Q6UW02 462 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 PAGE2Q7Z2X7 111 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 CUZD1Q86UP6 607 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 GPR180Q86V85 440 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 TMEM132CQ8N3T6 1108 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 OR1N1Q8NGS0 311 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 ELP5Q8TE02 316 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 DAZLQ92904 295 aaKnown RBP12.54□□□□□ -0.4
CLK3-213ENST00000563842 MAPKAP1Q9BPZ7 522 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 ROPN1BQ9BZX4 212 aaPredicted RBP12.54□□□□□ -0.4
CLK3-213ENST00000563842 WDR41Q9HAD4 459 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 ROPN1Q9HAT0 212 aaPredicted RBP12.54□□□□□ -0.4
CLK3-213ENST00000563842 ADAP2Q9NPF8 381 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 PNO1Q9NRX1 252 aaKnown RBP12.54□□□□□ -0.4
CLK3-213ENST00000563842 LYARQ9NX58 379 aaKnown RBP12.54□□□□□ -0.4
CLK3-213ENST00000563842 TRPS1Q9UHF7 1281 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 MID2Q9UJV3 735 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 FBXW2Q9UKT8 454 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 PLAAQ9Y263 795 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 PCDHGA10Q9Y5H3 936 aa12.54□□□□□ -0.4
CLK3-213ENST00000563842 TLDC2A0PJX2 215 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 OR5H15A6NDH6 313 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 A8MUA0 341 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 H3BQF6 201 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 COPEO14579 308 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 MYO1DO94832 1006 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 WDPCPO95876 746 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 KRT6AP02538 564 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 KRT6BP04259 564 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 IFNA16P05015 189 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 MYL2P10916 166 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 CRHR1P34998 444 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 KRT6CP48668 564 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 TNFSF10P50591 281 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 CLCN2P51788 898 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 NEK2P51955 445 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 CDH13P55290 713 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 ELAVL1Q15717 326 aaKnown RBP12.53□□□□□ -0.4
CLK3-213ENST00000563842 INAQ16352 499 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 UNC50Q53HI1 259 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 NUDT13Q86X67 352 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 RNF175Q8N4F7 328 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 CISD2Q8N5K1 135 aaKnown RBP12.53□□□□□ -0.4
CLK3-213ENST00000563842 HORMAD2Q8N7B1 307 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 B3GNT7Q8NFL0 401 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 RDH11Q8TC12 318 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 EPS8L3Q8TE67 593 aaKnown RBP12.53□□□□□ -0.4
CLK3-213ENST00000563842 TRPC4APQ8TEL6 797 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 AENQ8WTP8 325 aaKnown RBP12.53□□□□□ -0.4
CLK3-213ENST00000563842 SELENOMQ8WWX9 145 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 TANKQ92844 425 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 CAVIN3Q969G5 261 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 SNRNP40Q96DI7 357 aaKnown RBP12.53□□□□□ -0.4
CLK3-213ENST00000563842 MTFMTQ96DP5 389 aaKnown RBP12.53□□□□□ -0.4
CLK3-213ENST00000563842 L3HYPDHQ96EM0 354 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 VMP1Q96GC9 406 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 TMEM237Q96Q45 408 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 CSF3RQ99062 836 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 ALOXE3Q9BYJ1 711 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 DEFB126Q9BYW3 111 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 DDX31Q9H8H2 851 aaKnown RBP12.53□□□□□ -0.4
CLK3-213ENST00000563842 BRF2Q9HAW0 419 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 PLA2G3Q9NZ20 509 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 VTI1BQ9UEU0 232 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 CSAG2Q9Y5P2 127 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 CLCA3PQ9Y6N3 262 aa12.53□□□□□ -0.4
CLK3-213ENST00000563842 ARHGAP10A1A4S6 786 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 FCHO1O14526 889 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 DYRK3O43781 588 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 COX7A2P14406 83 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 KRT4P19013 534 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 TNNI3P19429 210 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 HMOX2P30519 316 aa12.52□□□□□ -0.41
CLK3-213ENST00000563842 HNRNPFP52597 415 aaKnown RBP12.52□□□□□ -0.41
CLK3-213ENST00000563842 PKNOX1P55347 436 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms