RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 TMEM26Q6ZUK4 368 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 RNF44Q7L0R7 432 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 VN1R5Q7Z5H4 357 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 ANKRD46Q86W74 232 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 CARM1Q86X55 608 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 CBR4Q8N4T8 237 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 ANKRD53Q8N9V6 530 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 OR13H1Q8NG92 308 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 OR2T29Q8NH02 315 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 BBS10Q8TAM1 723 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 BAHD1Q8TBE0 780 aaPredicted RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 TFAP2CQ92754 450 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 PROX1Q92786 737 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 TANKQ92844 425 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 KLK6Q92876 244 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 TM4SF18Q96CE8 201 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 MS4A6EQ96DS6 147 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 ZDHHC12Q96GR4 267 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 TCTN2Q96GX1 697 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 MAGED4Q96JG8 741 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 EGLN2Q96KS0 407 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 TEFMQ96QE5 360 aaKnown RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 SEPHS2Q99611 448 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 DPYSL5Q9BPU6 564 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 APOL4Q9BPW4 351 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 INPP5KQ9BT40 448 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 GPR174Q9BXC1 333 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 POLR2J2Q9GZM3 115 aaKnown RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 POLR2J3Q9H1A7 115 aaKnown RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 SEMA6CQ9H3T2 930 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 RUBCNLQ9H714 662 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 COQ10BQ9H8M1 238 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 ZNF556Q9HAH1 456 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 FZD3Q9NPG1 666 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 KRCC1Q9NPI7 259 aaPredicted RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 POLE3Q9NRF9 147 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 C1GALT1Q9NS00 363 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 RYDENQ9NUL5 291 aaKnown RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 EXD2Q9NVH0 621 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 PTGFRNQ9P2B2 879 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 KIF17Q9P2E2 1029 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 UTS2RQ9UKP6 389 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 PLAGL1Q9UM63 463 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 CYP8B1Q9UNU6 501 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 SLC9A8Q9Y2E8 581 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 NEUROG3Q9Y4Z2 214 aa7.15□□□□□ -1.26
VPS39-204ENST00000561818 CFAP20Q9Y6A4 193 aaKnown RBP7.15□□□□□ -1.26
VPS39-204ENST00000561818 HYKKA2RU49 373 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 OR5K3A6NET4 321 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 FAM170BA6NMN3 283 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 LMO7DNF2Z398 122 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 MPZL2O60487 215 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 COQ9O75208 318 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 TNFRSF21O75509 655 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 PRKD3O94806 890 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 OXSR1O95747 527 aaPredicted RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 ZNF682O95780 498 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 C6orf47O95873 294 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 C9P02748 559 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 GUSBP08236 651 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 ALPPL2P10696 532 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 ITGAMP11215 1152 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 ANXA8P13928 327 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 JUNDP17535 347 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 ATP5A1P25705 553 aaKnown RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 IFNGR2P38484 337 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 BCL6P41182 706 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 SLC19A1P41440 591 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 GPR3P46089 330 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 CXCL12P48061 93 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 ALDH9A1P49189 494 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 ARRB1P49407 418 aaPredicted RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 AFF3P51826 1226 aaKnown RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 ATXN3P54252 364 aaPredicted RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 TPD52P55327 224 aaPredicted RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 C21orf59P57076 290 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 CLDN2P57739 230 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 PHC1P78364 1004 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 GPLD1P80108 840 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 EIF2B5Q13144 721 aaKnown RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 GPR18Q14330 331 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 CLPPQ16740 277 aaPredicted RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 SLC36A3Q495N2 470 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 PRRT3Q5FWE3 981 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 NHSL2Q5HYW2 709 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 TOR1AIP1Q5JTV8 583 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 RBM48Q5RL73 367 aaKnown RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 YOD1Q5VVQ6 348 aaPredicted RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 TMEM214Q6NUQ4 689 aaKnown RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 SLC48A1Q6P1K1 146 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 RNF111Q6ZNA4 994 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 RD3Q7Z3Z2 195 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 KMT5CQ86Y97 462 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 CHERPQ8IWX8 916 aaKnown RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 KBTBD2Q8IY47 623 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 ADGRF3Q8IZF5 1079 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 C8orf59Q8N0T1 100 aaPredicted RBP7.14□□□□□ -1.27
VPS39-204ENST00000561818 LGI4Q8N135 537 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 ZNF687Q8N1G0 1237 aa7.14□□□□□ -1.27
VPS39-204ENST00000561818 LRRC25Q8N386 305 aaPredicted RBP7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms