RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 GK5Q6ZS86 529 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 ADAMTSL2Q86TH1 951 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 LIX1LQ8IVB5 337 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 C7orf57Q8NEG2 295 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 MYRIPQ8NFW9 859 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 KIAA1191Q96A73 305 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 SMC6Q96SB8 1091 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 LIN28AQ9H9Z2 209 aaKnown RBP15.21■□□□□ 0.03
CLN3-208ENST00000561505 POPDC3Q9HBV1 291 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 MOCS1Q9NZB8 636 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 LIPGQ9Y5X9 500 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 PSAT1Q9Y617 370 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 ZNF469Q96JG9 3925 aaPredicted RBP15.2■□□□□ 0.02
CLN3-208ENST00000561505 PRRC2AP48634 2157 aaKnown RBP15.2■□□□□ 0.02
CLN3-208ENST00000561505 A0A0G2JNJ9 132 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 NPEPPSL1A6NEC2 478 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 TP73O15350 636 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 TAPBPO15533 448 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 HCN1O60741 890 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 WDR1O75083 606 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 SCELO95171 688 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 RNF4P78317 190 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 IGLV3-21P80748 117 aaPredicted RBP15.2■□□□□ 0.02
CLN3-208ENST00000561505 SLC13A2Q13183 592 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 RCN2Q14257 317 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 MORF4L2Q15014 288 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 ZNF750Q32MQ0 723 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 PIGGQ5H8A4 983 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 UBE3DQ7Z6J8 389 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 KRT78Q8N1N4 520 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 OR5M3Q8NGP4 307 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 OSBPL9Q96SU4 736 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 CSF3RQ99062 836 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 ALOXE3Q9BYJ1 711 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 REXO4Q9GZR2 422 aaKnown RBP15.2■□□□□ 0.02
CLN3-208ENST00000561505 LYRM4Q9HD34 91 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 Q9UFV3 132 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 CLCA3PQ9Y6N3 262 aa15.2■□□□□ 0.02
CLN3-208ENST00000561505 A0A0G2JN53 185 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 FAM166BA8MTA8 275 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 WWP2O00308 870 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 WDR47O94967 919 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 IGKV3-11P04433 115 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 CD99P14209 185 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 ADH7P40394 386 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 CASP2P42575 452 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 MAGEA5P43359 124 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 PLA2G16P53816 162 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 PLGLB1Q02325 96 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 FOLH1Q04609 750 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 PCDH1Q08174 1060 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 ILF2Q12905 390 aaKnown RBP15.19■□□□□ 0.02
CLN3-208ENST00000561505 BMPR2Q13873 1038 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 SERTAD2Q14140 314 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 PPP1R7Q15435 360 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 TGFBIQ15582 683 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 TSNQ15631 228 aaKnown RBP15.19■□□□□ 0.02
CLN3-208ENST00000561505 C18orf21Q32NC0 220 aaPredicted RBP15.19■□□□□ 0.02
CLN3-208ENST00000561505 ZNF791Q3KP31 576 aaPredicted RBP15.19■□□□□ 0.02
CLN3-208ENST00000561505 SLC25A35Q3KQZ1 300 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 RIPPLY2Q5TAB7 128 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 TRIM40Q6P9F5 258 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 OPN5Q6U736 354 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 LYPD8Q6UX82 237 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 TGIF2LYQ8IUE0 185 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 PDIK1LQ8N165 341 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 ZNF321PQ8N8H1 164 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 FAM47BQ8NA70 645 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 OR5L2Q8NGL0 311 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 ZNF721Q8TF20 911 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 TMEM79Q9BSE2 394 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 DERL2Q9GZP9 239 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 SACM1LQ9NTJ5 587 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 ZNF358Q9NW07 568 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 ATG4BQ9Y4P1 393 aa15.19■□□□□ 0.02
CLN3-208ENST00000561505 ANKHD1Q8IWZ3 2542 aaKnown RBP15.19■□□□□ 0.02
CLN3-208ENST00000561505 HRNRQ86YZ3 2850 aaPredicted RBP15.18■□□□□ 0.02
CLN3-208ENST00000561505 FAM95CA0A1B0GW59 222 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 ANKDD1BA6NHY2 528 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 SYT5O00445 386 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 HOXB4P17483 251 aaPredicted RBP15.18■□□□□ 0.02
CLN3-208ENST00000561505 EPORP19235 508 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 CD22P20273 847 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 ENDOUP21128 410 aaKnown RBP15.18■□□□□ 0.02
CLN3-208ENST00000561505 SAT1P21673 171 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 CERS1P27544 350 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 MGAT5Q09328 741 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 SLC10A1Q14973 349 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 ADNP2Q6IQ32 1131 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 OR5M9Q8NGP3 310 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 NUBPLQ8TB37 319 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 SLC2A12Q8TD20 617 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 PAQR8Q8TEZ7 354 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 NRGNQ92686 78 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 ANKRD9Q96BM1 317 aaPredicted RBP15.18■□□□□ 0.02
CLN3-208ENST00000561505 SARAFQ96BY9 339 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 EGFL8Q99944 293 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 PROK2Q9HC23 129 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 ACKR4Q9NPB9 350 aa15.18■□□□□ 0.02
CLN3-208ENST00000561505 PPANQ9NQ55 473 aaKnown RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms