RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 LRRC14BA6NHZ5 514 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 TMEM200CA6NKL6 621 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 KLRC4-KLRK1H3BQV0 150 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 K7EPI3 171 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 WWP2O00308 870 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 CDK2AP1O14519 115 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 TFECO14948 347 aaPredicted RBP9.51□□□□□ -0.89
LDLR-214ENST00000560628 HS6ST1O60243 411 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 CDC40O60508 579 aaKnown RBP eCLIP9.51□□□□□ -0.89
LDLR-214ENST00000560628 KERAO60938 352 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 OR2J2O76002 312 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 C2P06681 752 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 CASP2P42575 452 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 SSR4P51571 173 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 SMSP52788 366 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 DDX39BQ13838 428 aaKnown RBP9.51□□□□□ -0.89
LDLR-214ENST00000560628 RCN2Q14257 317 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 CDSNQ15517 529 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 TERF2Q15554 542 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 ELAVL1Q15717 326 aaKnown RBP9.51□□□□□ -0.89
LDLR-214ENST00000560628 UAP1Q16222 522 aaPredicted RBP9.51□□□□□ -0.89
LDLR-214ENST00000560628 AP5B1Q2VPB7 878 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 XKRXQ6PP77 449 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 IL20RBQ6UXL0 311 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 RPTNQ6XPR3 784 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 BNC2Q6ZN30 1099 aaPredicted RBP9.51□□□□□ -0.89
LDLR-214ENST00000560628 CHSY3Q70JA7 882 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 MYLK4Q86YV6 388 aaPredicted RBP9.51□□□□□ -0.89
LDLR-214ENST00000560628 CHERPQ8IWX8 916 aaKnown RBP9.51□□□□□ -0.89
LDLR-214ENST00000560628 MCEMP1Q8IX19 187 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 OR4N5Q8IXE1 308 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 SRFBP1Q8NEF9 429 aaKnown RBP9.51□□□□□ -0.89
LDLR-214ENST00000560628 OR7G3Q8NG95 312 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 DOK4Q8TEW6 326 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 AGAP11Q8TF27 550 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 PTPMT1Q8WUK0 201 aaPredicted RBP9.51□□□□□ -0.89
LDLR-214ENST00000560628 UBE2E3Q969T4 207 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 PHF12Q96QT6 1004 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 LRRC1Q9BTT6 524 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 TBCDQ9BTW9 1192 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 PHACTR1Q9C0D0 580 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 OR8D2Q9GZM6 311 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 OR51B5Q9H339 312 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 LYRM4Q9HD34 91 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 VTI1BQ9UEU0 232 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 ERVK-11Q9UQG0 969 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 YARS2Q9Y2Z4 477 aaKnown RBP9.51□□□□□ -0.89
LDLR-214ENST00000560628 MEMO1Q9Y316 297 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 ANGPTL3Q9Y5C1 460 aa9.51□□□□□ -0.89
LDLR-214ENST00000560628 KLF2Q9Y5W3 355 aaPredicted RBP9.51□□□□□ -0.89
LDLR-214ENST00000560628 PCNX1Q96RV3 2341 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 TEX15Q9BXT5 2789 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 A0A1B0GTH9 108 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 HMX2A2RU54 273 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 A8MVJ9 347 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 C17orf105B2RV13 164 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 G3V3Y1 287 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 OR6B1O95007 311 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 MTHFD2P13995 350 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 EPB42P16452 691 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 HIST1H1TP22492 207 aaPredicted RBP9.5□□□□□ -0.89
LDLR-214ENST00000560628 CPN2P22792 545 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 SSR2P43308 183 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 NR0B1P51843 470 aaKnown RBP9.5□□□□□ -0.89
LDLR-214ENST00000560628 SLAMF1Q13291 335 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 NAB1Q13506 487 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 NAA30Q147X3 362 aaPredicted RBP9.5□□□□□ -0.89
LDLR-214ENST00000560628 PFKFB4Q16877 469 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 ZNF630Q2M218 657 aaPredicted RBP9.5□□□□□ -0.89
LDLR-214ENST00000560628 ZNF750Q32MQ0 723 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 TMEM35AQ53FP2 167 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 UBAP2Q5T6F2 1119 aaKnown RBP9.5□□□□□ -0.89
LDLR-214ENST00000560628 DEPDC1Q5TB30 811 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 KHDRBS2Q5VWX1 349 aaKnown RBP9.5□□□□□ -0.89
LDLR-214ENST00000560628 OR4C11Q6IEV9 310 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 HSDL2Q6YN16 418 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 TICAM1Q8IUC6 712 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 LAS2Q8IYD9 372 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 CENPLQ8N0S6 344 aaPredicted RBP9.5□□□□□ -0.89
LDLR-214ENST00000560628 POGLUT1Q8NBL1 392 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 MORN4Q8NDC4 146 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 HUS1BQ8NHY5 278 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 ASB15Q8WXK1 588 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 DAZLQ92904 295 aaKnown RBP9.5□□□□□ -0.89
LDLR-214ENST00000560628 ANKRD9Q96BM1 317 aaPredicted RBP9.5□□□□□ -0.89
LDLR-214ENST00000560628 PPWD1Q96BP3 646 aaKnown RBP9.5□□□□□ -0.89
LDLR-214ENST00000560628 CMTM7Q96FZ5 175 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 MTERF1Q99551 399 aaKnown RBP9.5□□□□□ -0.89
LDLR-214ENST00000560628 ROGDIQ9GZN7 287 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 DEFB127Q9H1M4 99 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 TIMMDC1Q9NPL8 285 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 SNX15Q9NRS6 342 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 ZDHHC18Q9NUE0 388 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 HPF1Q9NWY4 346 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 MYOTQ9UBF9 498 aa9.5□□□□□ -0.89
LDLR-214ENST00000560628 GTF3C1Q12789 2109 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 A0A087X1B8 175 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 A0A096LPK6 155 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 A0A0G2JMM0 328 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 A0A1W2PPB8 328 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms