RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 NADKO95544 446 aaPredicted RBP8.5□□□□□ -1.05
HDDC3-204ENST00000559834 CD99P14209 185 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 COX7A2P14406 83 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 GABRA1P14867 456 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 DNAJA1P31689 397 aaKnown RBP8.5□□□□□ -1.05
HDDC3-204ENST00000559834 HNRNPH1P31943 449 aaKnown RBP8.5□□□□□ -1.05
HDDC3-204ENST00000559834 SLC6A12P48065 614 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 KCNC1P48547 511 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 MAN2A2P49641 1150 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 HK2P52789 917 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 LIM2P55344 173 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 ARL4CP56559 192 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 RNF4P78317 190 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 FOLH1Q04609 750 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 BIKQ13323 160 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 LAPTM5Q13571 262 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 TSNQ15631 228 aaKnown RBP8.5□□□□□ -1.05
HDDC3-204ENST00000559834 MPEG1Q2M385 716 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 HYAL4Q2M3T9 481 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 ADPRMQ3LIE5 342 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 PAGE2BQ5JRK9 111 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 CDKL4Q5MAI5 379 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 SLC22A10Q63ZE4 541 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 STEAP4Q687X5 459 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 SULT1C3Q6IMI6 304 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 ABHD17CQ6PCB6 329 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 TRMT10BQ6PF06 316 aaKnown RBP8.5□□□□□ -1.05
HDDC3-204ENST00000559834 C16orf47Q6ZP98 133 aaPredicted RBP8.5□□□□□ -1.05
HDDC3-204ENST00000559834 SYDE1Q6ZW31 735 aaPredicted RBP8.5□□□□□ -1.05
HDDC3-204ENST00000559834 TRILQ7L0X0 811 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 RPRMLQ8N4K4 120 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 CHDHQ8NE62 594 aaPredicted RBP8.5□□□□□ -1.05
HDDC3-204ENST00000559834 OR5M9Q8NGP3 310 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 PTPMT1Q8WUK0 201 aaPredicted RBP8.5□□□□□ -1.05
HDDC3-204ENST00000559834 PTCD3Q96EY7 689 aaKnown RBP8.5□□□□□ -1.05
HDDC3-204ENST00000559834 LRRC46Q96FV0 321 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 SCYL1Q96KG9 808 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 RUNDC3BQ96NL0 473 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 KCNC2Q96PR1 638 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 EFCAB11Q9BUY7 163 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 EHD1Q9H4M9 534 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 EXO5Q9H790 373 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 POPDC3Q9HBV1 291 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 LYRM4Q9HD34 91 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 RYDENQ9NUL5 291 aaKnown RBP8.5□□□□□ -1.05
HDDC3-204ENST00000559834 DNAJC11Q9NVH1 559 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 ALKBH4Q9NXW9 302 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 COPS7AQ9UBW8 275 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 CHMP2BQ9UQN3 213 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 TEX264Q9Y6I9 313 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 DNAJC13O75165 2243 aa8.5□□□□□ -1.05
HDDC3-204ENST00000559834 ANKRD17O75179 2603 aaKnown RBP8.5□□□□□ -1.05
HDDC3-204ENST00000559834 ZNF407Q9C0G0 2248 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 FBN2P35556 2912 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 SPG11Q96JI7 2443 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 ATP6AP2A0A1C7CYW4 349 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 NCF1BA6NI72 391 aaPredicted RBP8.49□□□□□ -1.05
HDDC3-204ENST00000559834 NCF1CA8MVU1 366 aaPredicted RBP8.49□□□□□ -1.05
HDDC3-204ENST00000559834 C17orf105B2RV13 164 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 TGFBR3LH3BV60 316 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 HCN1O60741 890 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 STK16O75716 305 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 ATP6AP2O75787 350 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 GLI4P10075 376 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 NCF1P14598 390 aaPredicted RBP8.49□□□□□ -1.05
HDDC3-204ENST00000559834 IVDP26440 423 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 GGT5P36269 586 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 MAGEA5P43359 124 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 HNRNPFP52597 415 aaKnown RBP8.49□□□□□ -1.05
HDDC3-204ENST00000559834 IST1P53990 364 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 TAS2R39P59534 338 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 POU4F1Q01851 419 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 TGFBIQ15582 683 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 AP5B1Q2VPB7 878 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 SLC25A35Q3KQZ1 300 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 TMEM35AQ53FP2 167 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 PIGGQ5H8A4 983 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 ARSKQ6UWY0 536 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 CHSY3Q70JA7 882 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 GPSM1Q86YR5 675 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 SLC15A4Q8N697 577 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 TMEM251Q8N6I4 163 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 SNX31Q8N9S9 440 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 TMEM52Q8NDY8 209 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 NINJ1Q92982 152 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 UBE2E3Q969T4 207 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 RBM18Q96H35 190 aaKnown RBP8.49□□□□□ -1.05
HDDC3-204ENST00000559834 F2RL3Q96RI0 385 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 FOXC2Q99958 501 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 TBCDQ9BTW9 1192 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 DERL2Q9GZP9 239 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 DDX47Q9H0S4 455 aaKnown RBP8.49□□□□□ -1.05
HDDC3-204ENST00000559834 RHOJQ9H4E5 214 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 PLAC1Q9HBJ0 212 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 PRDM7Q9NQW5 492 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 DNAJB12Q9NXW2 375 aaKnown RBP8.49□□□□□ -1.05
HDDC3-204ENST00000559834 MOCS1Q9NZB8 636 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 WWOXQ9NZC7 414 aa8.49□□□□□ -1.05
HDDC3-204ENST00000559834 ZNF490Q9ULM2 529 aaPredicted RBP8.49□□□□□ -1.05
HDDC3-204ENST00000559834 HCFC1P51610 2035 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms