RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SELENBP1Q13228 472 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 TRIM40Q6P9F5 258 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.28□□□□□ -0.44
LDLR-207ENST00000558013 COMTD1Q86VU5 262 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 LAS2Q8IYD9 372 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 AMER3Q8N944 861 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 PLA2G15Q8NCC3 412 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 GPR32P1Q8NGA4 272 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 OR4D11Q8NGI4 311 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 SLC38A5Q8WUX1 472 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 VPS35Q96QK1 796 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 SPATA9Q9BWV2 254 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 ZNF556Q9HAH1 456 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 DNAJC27Q9NZQ0 273 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 ASF1AQ9Y294 204 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 HCN4Q9Y3Q4 1203 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 FAM32AQ9Y421 112 aaKnown RBP12.28□□□□□ -0.44
LDLR-207ENST00000558013 OTOL1A6NHN0 477 aaPredicted RBP12.28□□□□□ -0.44
LDLR-207ENST00000558013 KIAA0513O60268 411 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 ENTPD6O75354 484 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 DLGAP3O95886 979 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 RPLP0P05388 317 aaKnown RBP12.28□□□□□ -0.44
LDLR-207ENST00000558013 ADH1AP07327 375 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 ALOX12P18054 663 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 CBLP22681 906 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 PCBP3P57721 371 aaKnown RBP12.28□□□□□ -0.44
LDLR-207ENST00000558013 SFSWAPQ12872 951 aaKnown RBP12.28□□□□□ -0.44
LDLR-207ENST00000558013 E2F2Q14209 437 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 DEPDC1Q5TB30 811 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 TMIGD1Q6UXZ0 262 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 CCDC149Q6ZUS6 474 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 PTCHD4Q6ZW05 846 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 ARMC8Q8IUR7 673 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 FAM20CQ8IXL6 584 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 METTL4Q8N3J2 472 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 ANKRD53Q8N9V6 530 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 DTD2Q96FN9 168 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 MACROD1Q9BQ69 325 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 FAM83CQ9BQN1 747 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 MMP27Q9H306 513 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 SLC23A2Q9UGH3 650 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 TCF20Q9UGU0 1960 aaKnown RBP12.28□□□□□ -0.44
LDLR-207ENST00000558013 PLPP1O14494 284 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 CCNB2O95067 398 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 GPR1P46091 355 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 FCHO2Q0JRZ9 810 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 ZNF77Q15935 545 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 SSX1Q16384 188 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 CRB2Q5IJ48 1285 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 FRMPD2BQ6IN97 320 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 PAQR6Q6TCH4 344 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 SZRD1Q7Z422 152 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 GRASPQ7Z6J2 395 aaPredicted RBP12.28□□□□□ -0.44
LDLR-207ENST00000558013 LACC1Q8IV20 430 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 GEMIN6Q8WXD5 167 aaKnown RBP12.28□□□□□ -0.44
LDLR-207ENST00000558013 ARRDC3Q96B67 414 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 ALPK3Q96L96 1907 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 COL21A1Q96P44 957 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 MGLLQ99685 303 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 PSD2Q9BQI7 771 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 ZDHHC5Q9C0B5 715 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 RERGLQ9H628 205 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 TMEM38AQ9H6F2 299 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 CTPS2Q9NRF8 586 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 PCDHGA3Q9Y5H0 932 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 ENPP4Q9Y6X5 453 aa12.28□□□□□ -0.44
LDLR-207ENST00000558013 FOXE1O00358 373 aaPredicted RBP12.27□□□□□ -0.44
LDLR-207ENST00000558013 CNOT3O75175 753 aaKnown RBP12.27□□□□□ -0.44
LDLR-207ENST00000558013 NME6O75414 186 aaPredicted RBP12.27□□□□□ -0.44
LDLR-207ENST00000558013 SLC6A11P48066 632 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 PNLIPRP1P54315 467 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 DSTNP60981 165 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 PCDH1Q08174 1060 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 MADCAM1Q13477 382 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 USP43Q70EL4 1123 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 TAGAPQ8N103 731 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 OXR1Q8N573 874 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 WDR36Q8NI36 951 aaKnown RBP12.27□□□□□ -0.44
LDLR-207ENST00000558013 ABHD8Q96I13 439 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 COQ10AQ96MF6 247 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 EFCAB11Q9BUY7 163 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 MYNNQ9NPC7 610 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 CCDC177Q9NQR7 707 aaPredicted RBP12.27□□□□□ -0.44
LDLR-207ENST00000558013 THSD1Q9NS62 852 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 ERVK13-1Q9NX77 482 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 FTSJ1Q9UET6 329 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 TAC3Q9UHF0 121 aa12.27□□□□□ -0.44
LDLR-207ENST00000558013 ARHGAP33O14559 1287 aa12.27□□□□□ -0.45
LDLR-207ENST00000558013 LRRTM2O43300 516 aa12.27□□□□□ -0.45
LDLR-207ENST00000558013 PRKRAO75569 313 aaKnown RBP12.27□□□□□ -0.45
LDLR-207ENST00000558013 GPX5O75715 221 aa12.27□□□□□ -0.45
LDLR-207ENST00000558013 CYP7B1O75881 506 aa12.27□□□□□ -0.45
LDLR-207ENST00000558013 ARAFP10398 606 aa12.27□□□□□ -0.45
LDLR-207ENST00000558013 CCL5P13501 91 aa12.27□□□□□ -0.45
LDLR-207ENST00000558013 VIPR2P41587 438 aa12.27□□□□□ -0.45
LDLR-207ENST00000558013 PXNP49023 591 aaPredicted RBP12.27□□□□□ -0.45
LDLR-207ENST00000558013 DHCR24Q15392 516 aa12.27□□□□□ -0.45
LDLR-207ENST00000558013 MLIPQ5VWP3 458 aa12.27□□□□□ -0.45
LDLR-207ENST00000558013 ZNF770Q6IQ21 691 aaPredicted RBP12.27□□□□□ -0.45
LDLR-207ENST00000558013 ERAP2Q6P179 960 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms