RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 ZNF665Q9H7R5 613 aa3.57□□□□□ -1.84
SCFD1-221ENST00000556534 VIPAS39Q9H9C1 493 aa3.57□□□□□ -1.84
SCFD1-221ENST00000556534 NMUR1Q9HB89 426 aa3.57□□□□□ -1.84
SCFD1-221ENST00000556534 THYN1Q9P016 225 aa3.57□□□□□ -1.84
SCFD1-221ENST00000556534 SPATA2Q9UM82 520 aa3.57□□□□□ -1.84
SCFD1-221ENST00000556534 ZFP37Q9Y6Q3 630 aaPredicted RBP3.57□□□□□ -1.84
SCFD1-221ENST00000556534 LOC390937A0A1W2PQ73 354 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 KRTAP9-6A8MVA2 160 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 M0R296 226 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 FBP2O00757 339 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 TXNL1O43396 289 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 STX6O43752 255 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 HPP00738 406 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 HCKP08631 526 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 ODC1P11926 461 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 OR1D2P34982 312 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 RIDAP52758 137 aaKnown RBP3.56□□□□□ -1.84
SCFD1-221ENST00000556534 PEX3P56589 373 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 RBBP4Q09028 425 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 ACKR1Q16570 336 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 C15orf32Q32M92 178 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 EIPR1Q53HC9 387 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 SLC25A30Q5SVS4 291 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 LYPLAL1Q5VWZ2 237 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 PLBD1Q6P4A8 553 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 REG3GQ6UW15 175 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 Q6ZR54 194 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 IQCA1Q86XH1 822 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 TUSC5Q8IXB3 177 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 RTL3Q8N8U3 475 aaKnown RBP3.56□□□□□ -1.84
SCFD1-221ENST00000556534 FIBINQ8TAL6 211 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 RCHY1Q96PM5 261 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 UBAC1Q9BSL1 405 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 IDI2Q9BXS1 227 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 ACPTQ9BZG2 426 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 ZNF350Q9GZX5 532 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 CUEDC2Q9H467 287 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 PRR34Q9NV39 138 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 MED17Q9NVC6 651 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 TMEM161AQ9NX61 479 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 ZNF319Q9P2F9 582 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 FBXL5Q9UKA1 691 aa3.56□□□□□ -1.84
SCFD1-221ENST00000556534 ZNF346Q9UL40 294 aaKnown RBP3.56□□□□□ -1.84
SCFD1-221ENST00000556534 ABCA7Q8IZY2 2146 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 SALL1Q9NSC2 1324 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 MAGEB16A2A368 324 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 RPL37AP8A6NKH3 93 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 ZNF724A8MTY0 619 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 PSMA7O14818 248 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 TTI1O43156 1089 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 ZNF354AO60765 605 aaPredicted RBP3.55□□□□□ -1.84
SCFD1-221ENST00000556534 ATP9AO75110 1047 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 RAD51DO75771 328 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 SEMA4FO95754 770 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 CALCAP01258 141 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 RPL9P32969 192 aaKnown RBP3.55□□□□□ -1.84
SCFD1-221ENST00000556534 FHITP49789 147 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 CSRP3P50461 194 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 RPS27AP62979 156 aaKnown RBP3.55□□□□□ -1.84
SCFD1-221ENST00000556534 CDC37Q16543 378 aaPredicted RBP3.55□□□□□ -1.84
SCFD1-221ENST00000556534 CCL14Q16627 93 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 CCDC158Q5M9N0 1113 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 CEACAM19Q7Z692 300 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 CARNMT1Q8N4J0 409 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 BANPQ8N9N5 519 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 SUMF1Q8NBK3 374 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 OR1B1Q8NGR6 318 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 PANX3Q96QZ0 392 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 LRRC2Q9BYS8 371 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 LRRCC1Q9C099 1032 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 LIME1Q9H400 295 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 UBE2TQ9NPD8 197 aaPredicted RBP3.55□□□□□ -1.84
SCFD1-221ENST00000556534 LEF1Q9UJU2 399 aaPredicted RBP3.55□□□□□ -1.84
SCFD1-221ENST00000556534 TP53TG3Q9ULZ0 132 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 NIP7Q9Y221 180 aaKnown RBP eCLIP3.55□□□□□ -1.84
SCFD1-221ENST00000556534 AUP1Q9Y679 476 aa3.55□□□□□ -1.84
SCFD1-221ENST00000556534 UMODL1Q5DID0 1318 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 OR5H15A6NDH6 313 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 IGLON5A6NGN9 336 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 SLC33A1O00400 549 aaPredicted RBP3.54□□□□□ -1.84
SCFD1-221ENST00000556534 GPRIN2O60269 458 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 FRAT2O75474 233 aaPredicted RBP3.54□□□□□ -1.84
SCFD1-221ENST00000556534 SKILP12757 684 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 SLC1A4P43007 532 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 NOVP48745 357 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 ST8SIA6P61647 398 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 MFGE8Q08431 387 aaPredicted RBP3.54□□□□□ -1.84
SCFD1-221ENST00000556534 PPP2R5CQ13362 524 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 ZNF789Q5FWF6 425 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 LRRC38Q5VT99 294 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 SEL1L3Q68CR1 1132 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 LEMD1Q68G75 181 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 LINC00696Q6ZRV3 163 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 NUFIP2Q7Z417 695 aaKnown RBP3.54□□□□□ -1.84
SCFD1-221ENST00000556534 MARCH9Q86YJ5 346 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 TBC1D10CQ8IV04 446 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 ZNF444Q8N0Y2 327 aaPredicted RBP3.54□□□□□ -1.84
SCFD1-221ENST00000556534 NUP93Q8N1F7 819 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 ZNRF1Q8ND25 227 aa3.54□□□□□ -1.84
SCFD1-221ENST00000556534 GDAP1Q8TB36 358 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms