RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 TCF25Q9BQ70 676 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 C17orf62Q9BQA9 187 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 C1QTNF7Q9BXJ2 289 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 TDP1Q9NUW8 608 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 ABCG2Q9UNQ0 655 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 SNX8Q9Y5X2 465 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 OR5K4A6NMS3 321 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 E7EQ34 232 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 PER2O15055 1255 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 SLCO2B1O94956 709 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 CCNDBP1O95273 360 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 ZNF682O95780 498 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 PRPS2P11908 318 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 HLA-DMAP28067 261 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 SLC19A1P41440 591 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 METAP1P53582 386 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 WNT3P56703 355 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 CD83Q01151 205 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 COX10Q12887 443 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 HENMT1Q5T8I9 393 aaKnown RBP11.72□□□□□ -0.53
SHMT2-207ENST00000553837 PLPP4Q5VZY2 271 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 TIGD3Q6B0B8 471 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 CREB3L2Q70SY1 520 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 SPRED2Q7Z698 418 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 KRT73Q86Y46 540 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 DNAJC22Q8N4W6 341 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 RASGEF1AQ8N9B8 481 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 DEDD2Q8WXF8 326 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 GGHQ92820 318 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 TESCQ96BS2 214 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 OR4K3Q96R72 315 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 ATP6V1HQ9UI12 483 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 TEKT2Q9UIF3 430 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 MUTYHQ9UIF7 546 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 KLHL21Q9UJP4 597 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 C5orf42Q9H799 3197 aa11.72□□□□□ -0.53
SHMT2-207ENST00000553837 E9PQ18 207 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 SLC16A5O15375 505 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 TSPAN6O43657 245 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 NDUFA2O43678 99 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 SCN2BO60939 215 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 SH3BGRLO75368 114 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 ETHE1O95571 254 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 FABP3P05413 133 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 RHOP08100 348 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 JUPP14923 745 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 EPHA5P54756 1037 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 POLR2LP62875 67 aaKnown RBP11.71□□□□□ -0.53
SHMT2-207ENST00000553837 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.71□□□□□ -0.53
SHMT2-207ENST00000553837 MESP2Q0VG99 397 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 SP140Q13342 867 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 TNK1Q13470 666 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 ASAH1Q13510 395 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 ZNF77Q15935 545 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 UGT8Q16880 541 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 ZDHHC20Q5W0Z9 365 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 FAHD1Q6P587 224 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 BRAT1Q6PJG6 821 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 DOK6Q6PKX4 331 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 TMPRSS11AQ6ZMR5 421 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 KIAA0907Q7Z7F0 614 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-207ENST00000553837 GALNT10Q86SR1 603 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 RNF130Q86XS8 419 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 RDH10Q8IZV5 341 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 STX19Q8N4C7 294 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 LMNTD1Q8N9Z9 388 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 WDR20Q8TBZ3 569 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 PMEPA1Q969W9 287 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 FCRL1Q96LA6 429 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 FRMD6Q96NE9 622 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 LRRC3BQ96PB8 259 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 MTERF1Q99551 399 aaKnown RBP11.71□□□□□ -0.53
SHMT2-207ENST00000553837 MMP28Q9H239 520 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 NIPAL2Q9H841 368 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 SMURF1Q9HCE7 757 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 SAMHD1Q9Y3Z3 626 aaKnown RBP11.71□□□□□ -0.53
SHMT2-207ENST00000553837 PCDHGA6Q9Y5G7 932 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 CDH23Q9H251 3354 aa11.71□□□□□ -0.53
SHMT2-207ENST00000553837 EFCAB10A6NFE3 127 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 NPIPB8E9PQR5 432 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 NPC1O15118 1278 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 RGS5O15539 181 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 CYP7B1O75881 506 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 ADORA3P0DMS8 318 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 ZNF30P17039 623 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 SYN1P17600 705 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 MYL9P24844 172 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 BDKRB1P46663 353 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 CAMK2GQ13555 558 aaPredicted RBP11.71□□□□□ -0.54
SHMT2-207ENST00000553837 GNA13Q14344 377 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 IRF3Q14653 427 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 EIF4HQ15056 248 aaKnown RBP11.71□□□□□ -0.54
SHMT2-207ENST00000553837 PXDC1Q5TGL8 231 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 TECPR1Q7Z6L1 1165 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 THOC6Q86W42 341 aaKnown RBP11.71□□□□□ -0.54
SHMT2-207ENST00000553837 VWA5B2Q8N398 1253 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 TP53I13Q8NBR0 393 aaPredicted RBP11.71□□□□□ -0.54
SHMT2-207ENST00000553837 ASB15Q8WXK1 588 aa11.71□□□□□ -0.54
SHMT2-207ENST00000553837 PAWRQ96IZ0 340 aaKnown RBP11.71□□□□□ -0.54
SHMT2-207ENST00000553837 MYOCQ99972 504 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms