RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 GPR143P51810 404 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 ART1P52961 327 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 RAB38P57729 211 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 BTN3A2P78410 334 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 MGAT5Q09328 741 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 SLC13A2Q13183 592 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 RCN2Q14257 317 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 TSNQ15631 228 aaKnown RBP7.09□□□□□ -1.27
NEK3-201ENST00000550331 ELAVL1Q15717 326 aaKnown RBP7.09□□□□□ -1.27
NEK3-201ENST00000550331 ADPRMQ3LIE5 342 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 TMEM211Q6ICI0 200 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 ARHGAP11AQ6P4F7 1023 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 PAOXQ6QHF9 649 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 TMIGD1Q6UXZ0 262 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 C3P1Q6ZMU1 363 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 MDGA2Q7Z553 956 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 ZC3HC1Q86WB0 502 aaKnown RBP7.09□□□□□ -1.27
NEK3-201ENST00000550331 KRT78Q8N1N4 520 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 SLC35F6Q8N357 371 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 TCAIMQ8N3R3 496 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 ASB5Q8WWX0 329 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 NCLNQ969V3 563 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 MS4A6EQ96DS6 147 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 FAR2Q96K12 515 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 RUNDC3BQ96NL0 473 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 CCDC77Q9BR77 488 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 AICDAQ9GZX7 198 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 RHBGQ9H310 441 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 TP63Q9H3D4 680 aaPredicted RBP7.09□□□□□ -1.27
NEK3-201ENST00000550331 EHD1Q9H4M9 534 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 NT5DC2Q9H857 520 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 POPDC3Q9HBV1 291 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 ADAP2Q9NPF8 381 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 PRTFDC1Q9NRG1 225 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 NSMCE4AQ9NXX6 385 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 MOCS1Q9NZB8 636 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 GPRC5BQ9NZH0 403 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 FBXW2Q9UKT8 454 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 YARS2Q9Y2Z4 477 aaKnown RBP7.09□□□□□ -1.27
NEK3-201ENST00000550331 CLDN16Q9Y5I7 305 aa7.09□□□□□ -1.27
NEK3-201ENST00000550331 ABCA4P78363 2273 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 PRRC2AP48634 2157 aaKnown RBP7.08□□□□□ -1.28
NEK3-201ENST00000550331 INTS1Q8N201 2190 aaKnown RBP7.08□□□□□ -1.28
NEK3-201ENST00000550331 ELOA3CA0A087WX78 387 aaPredicted RBP7.08□□□□□ -1.28
NEK3-201ENST00000550331 ELOA3DA6NLF2 546 aaPredicted RBP7.08□□□□□ -1.28
NEK3-201ENST00000550331 USP27XA6NNY8 438 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 A8MVJ9 347 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 FOXO6A8MYZ6 492 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 ACOT7O00154 380 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 ZNHIT1O43257 154 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 CDC40O60508 579 aaKnown RBP eCLIP7.08□□□□□ -1.28
NEK3-201ENST00000550331 OR2J2O76002 312 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 ZFAND5O76080 213 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 DRD2P14416 443 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 IGFBP2P18065 325 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 SAT1P21673 171 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 CHRNB4P30926 498 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 GGT5P36269 586 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 RFC3P40938 356 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 SSR4P51571 173 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 ARL4CP56559 192 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 GPR85P60893 370 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 TGM3Q08188 693 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 RUNX2Q13950 521 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 SLBPQ14493 270 aaKnown RBP eCLIP7.08□□□□□ -1.28
NEK3-201ENST00000550331 EFTUD2Q15029 972 aaKnown RBP eCLIP7.08□□□□□ -1.28
NEK3-201ENST00000550331 TGFBIQ15582 683 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 ELOA3BQ3SY89 546 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 CDKL4Q5MAI5 379 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 HP1BP3Q5SSJ5 553 aaPredicted RBP7.08□□□□□ -1.28
NEK3-201ENST00000550331 TRIM40Q6P9F5 258 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 MEX3BQ6ZN04 569 aaKnown RBP7.08□□□□□ -1.28
NEK3-201ENST00000550331 RGS9BPQ6ZS82 235 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 FRA10AC1Q70Z53 315 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 ZNF595Q8IYB9 648 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 TMEM132CQ8N3T6 1108 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 MARVELD2Q8N4S9 558 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 MORN4Q8NDC4 146 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 PSD4Q8NDX1 1056 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 ELOA3Q8NG57 546 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 OR2L5Q8NG80 312 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 OR8K3Q8NH51 312 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 ASB15Q8WXK1 588 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 RND1Q92730 232 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 DAZLQ92904 295 aaKnown RBP7.08□□□□□ -1.28
NEK3-201ENST00000550331 RHBDF1Q96CC6 855 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 VPS39Q96JC1 886 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 PWWP2AQ96N64 755 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 QRFPRQ96P65 431 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 SERINC2Q96SA4 455 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 MCMBPQ9BTE3 642 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 REXO4Q9GZR2 422 aaKnown RBP7.08□□□□□ -1.28
NEK3-201ENST00000550331 RHOJQ9H4E5 214 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 ZDHHC11Q9H8X9 412 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 CNOT10Q9H9A5 744 aaKnown RBP7.08□□□□□ -1.28
NEK3-201ENST00000550331 PNO1Q9NRX1 252 aaKnown RBP7.08□□□□□ -1.28
NEK3-201ENST00000550331 HPF1Q9NWY4 346 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 KCMF1Q9P0J7 381 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 MYOTQ9UBF9 498 aa7.08□□□□□ -1.28
NEK3-201ENST00000550331 CTNNAL1Q9UBT7 734 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms