RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 CAND1Q86VP6 1230 aaKnown RBP15.65■□□□□ 0.1
VPS29-204ENST00000548259 ANKRD53Q8N9V6 530 aa15.65■□□□□ 0.1
VPS29-204ENST00000548259 NUDT8Q8WV74 236 aa15.65■□□□□ 0.1
VPS29-204ENST00000548259 SCYL1Q96KG9 808 aa15.65■□□□□ 0.1
VPS29-204ENST00000548259 DESI2Q9BSY9 194 aa15.65■□□□□ 0.1
VPS29-204ENST00000548259 KLHL31Q9H511 634 aa15.65■□□□□ 0.1
VPS29-204ENST00000548259 ZNF629Q9UEG4 869 aaPredicted RBP15.65■□□□□ 0.1
VPS29-204ENST00000548259 DNAJC13O75165 2243 aa15.65■□□□□ 0.1
VPS29-204ENST00000548259 ZNF407Q9C0G0 2248 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 GUCA1CO95843 209 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 FGGP02679 453 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 HEXAP06865 529 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 EPXP11678 715 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 TACR1P25103 407 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 PPP2R1BP30154 601 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 DNASE1L1P49184 302 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 KCNJ2P63252 427 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 PCBP2Q15366 365 aaKnown RBP eCLIP15.64■□□□□ 0.09
VPS29-204ENST00000548259 THOC6Q86W42 341 aaKnown RBP15.64■□□□□ 0.09
VPS29-204ENST00000548259 ULK2Q8IYT8 1036 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 MCUQ8NE86 351 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 CCT6BQ92526 530 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 KIAA1191Q96A73 305 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 YIPF4Q9BSR8 244 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 CNPPD1Q9BV87 410 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 OR8D2Q9GZM6 311 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 SPNS1Q9H2V7 528 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 ZNF395Q9H8N7 513 aaPredicted RBP15.64■□□□□ 0.09
VPS29-204ENST00000548259 COPS7BQ9H9Q2 264 aaPredicted RBP15.64■□□□□ 0.09
VPS29-204ENST00000548259 IARS2Q9NSE4 1012 aaKnown RBP15.64■□□□□ 0.09
VPS29-204ENST00000548259 BEX4Q9NWD9 120 aaPredicted RBP15.64■□□□□ 0.09
VPS29-204ENST00000548259 QPCTLQ9NXS2 382 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 ATG4BQ9Y4P1 393 aa15.64■□□□□ 0.09
VPS29-204ENST00000548259 AHRRA9YTQ3 701 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 CES2O00748 559 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 ERI3O43414 337 aaKnown RBP15.63■□□□□ 0.09
VPS29-204ENST00000548259 DYRK3O43781 588 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 CTNSO60931 367 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 IL2RAP01589 272 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 CELA3AP09093 270 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 HOXC12P31275 282 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 RNF4P78317 190 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 TGM3Q08188 693 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 FOXO1Q12778 655 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 SERTAD2Q14140 314 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 SLC22A10Q63ZE4 541 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 TRIM40Q6P9F5 258 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 SPNS2Q8IVW8 549 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 KLHDC8AQ8IYD2 350 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 FAM47BQ8NA70 645 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 C2CD4AQ8NCU7 369 aaPredicted RBP15.63■□□□□ 0.09
VPS29-204ENST00000548259 SLC22A8Q8TCC7 542 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 HSPBAP1Q96EW2 488 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 SERPINB12Q96P63 405 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 SMR3AQ99954 134 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 SH3GL2Q99962 352 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 RYDENQ9NUL5 291 aaKnown RBP15.63■□□□□ 0.09
VPS29-204ENST00000548259 TUBA8Q9NY65 449 aaPredicted RBP15.63■□□□□ 0.09
VPS29-204ENST00000548259 VTI1BQ9UEU0 232 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 GUCA1BQ9UMX6 200 aa15.63■□□□□ 0.09
VPS29-204ENST00000548259 NSD1Q96L73 2696 aaPredicted RBP15.62■□□□□ 0.09
VPS29-204ENST00000548259 JMJD1CQ15652 2540 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 GOLGA8MH3BSY2 632 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 COX7A2P14406 83 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 ZNF75DP51815 510 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 DCAF7P61962 342 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 NKX6-1P78426 367 aaPredicted RBP15.62■□□□□ 0.09
VPS29-204ENST00000548259 RUNX2Q13950 521 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 MPEG1Q2M385 716 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 TMEM198Q66K66 360 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 TMIGD1Q6UXZ0 262 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 CHSY3Q70JA7 882 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 CLNKQ7Z7G1 428 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 LACC1Q8IV20 430 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 PM20D2Q8IYS1 436 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 DND1Q8IYX4 353 aaKnown RBP15.62■□□□□ 0.09
VPS29-204ENST00000548259 KRT78Q8N1N4 520 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 NEIL3Q8TAT5 605 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 RUNDC3BQ96NL0 473 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 SERINC2Q96SA4 455 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 ALOXE3Q9BYJ1 711 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 ZFP64Q9NPA5 681 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 ACKR4Q9NPB9 350 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 SPACA6W5XKT8 324 aa15.62■□□□□ 0.09
VPS29-204ENST00000548259 ANKDD1BA6NHY2 528 aa15.61■□□□□ 0.09
VPS29-204ENST00000548259 EPPINO95925 133 aa15.61■□□□□ 0.09
VPS29-204ENST00000548259 KRT14P02533 472 aa15.61■□□□□ 0.09
VPS29-204ENST00000548259 CCL3P10147 92 aa15.61■□□□□ 0.09
VPS29-204ENST00000548259 GNAZP19086 355 aa15.61■□□□□ 0.09
VPS29-204ENST00000548259 TIMP3P35625 211 aa15.61■□□□□ 0.09
VPS29-204ENST00000548259 MTTPP55157 894 aa15.61■□□□□ 0.09
VPS29-204ENST00000548259 CDKN2DP55273 166 aa15.61■□□□□ 0.09
VPS29-204ENST00000548259 SORDQ00796 357 aa15.61■□□□□ 0.09
VPS29-204ENST00000548259 ANKRD22Q5VYY1 191 aa15.61■□□□□ 0.09
VPS29-204ENST00000548259 RELL2Q8NC24 303 aaPredicted RBP15.61■□□□□ 0.09
VPS29-204ENST00000548259 SREK1Q8WXA9 508 aaKnown RBP15.61■□□□□ 0.09
VPS29-204ENST00000548259 MS4A6EQ96DS6 147 aa15.61■□□□□ 0.09
VPS29-204ENST00000548259 ZNF703Q9H7S9 590 aaPredicted RBP15.61■□□□□ 0.09
VPS29-204ENST00000548259 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.61■□□□□ 0.09
VPS29-204ENST00000548259 CNIH4Q9P003 139 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms