RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PTRH1Q86Y79 214 aaKnown RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 LSMEM2Q8N112 164 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 MINDY2Q8NBR6 621 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 FBXW5Q969U6 566 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 RTP4Q96DX8 246 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 PYURFQ96I23 114 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 TAAR9Q96RI9 348 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 ADAM2Q99965 735 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 DUSP15Q9H1R2 295 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 MUC13Q9H3R2 512 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 MS4A12Q9NXJ0 267 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 CNOT11Q9UKZ1 510 aaKnown RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 RAI2Q9Y5P3 530 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 KIAA0100Q14667 2235 aaKnown RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 CEP290O15078 2479 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 ISM1B1AKI9 464 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 H0YAE9 185 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 PGRMC2O15173 223 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 FFAR2O15552 330 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 OR5F1O95221 314 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 NDST3O95803 873 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 CRYZL1O95825 349 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 ANXA4P09525 319 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 POLR2EP19388 210 aaKnown RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 CRHBPP24387 322 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 RORCP51449 518 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 ZNF81P51508 661 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 RAB8AP61006 207 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 RPS24P62847 133 aaKnown RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 DEFA5Q01523 94 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 TAF10Q12962 218 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 CHIT1Q13231 466 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 E2F2Q14209 437 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 BCL7AQ4VC05 210 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 RFTN2Q52LD8 501 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 SETMARQ53H47 684 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 SFRP5Q5T4F7 317 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 STEAP4Q687X5 459 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 FAM180BQ6P0A1 224 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 SMARCD3Q6STE5 483 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 RSPO2Q6UXX9 243 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 RTN4RL1Q86UN2 441 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 MINDY1Q8N5J2 469 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 ZNF366Q8N895 744 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 ZNF675Q8TD23 568 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 BADQ92934 168 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 SLC38A4Q969I6 547 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 PTERQ96BW5 349 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 NPY6RQ99463 290 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 ZFYVE21Q9BQ24 234 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 GSDMCQ9BYG8 508 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 OSGEPL1Q9H4B0 414 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 MEAF6Q9HAF1 191 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 VAPAQ9P0L0 249 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 RABL2AQ9UBK7 228 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 FBLN5Q9UBX5 448 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 CD84Q9UIB8 345 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 PCDHGB6Q9Y5F9 930 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 N6AMT1Q9Y5N5 214 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 ANAPC1Q9H1A4 1944 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 A0A0G2JN53 185 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 OR2AG2A6NM03 316 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 H3BSH0 61 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 TERTO14746 1132 aaKnown RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 ORC5O43913 435 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 NUAK1O60285 661 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 CLEC2LP0C7M8 214 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 CYP2A7P20853 494 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 PROZP22891 400 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 PPP2R1BP30154 601 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 CSTF2P33240 577 aaKnown RBP eCLIP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 DCTP40126 519 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 UGT2B15P54855 530 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 BNC1Q01954 994 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 TARDBPQ13148 414 aaKnown RBP eCLIP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 HNRNPA0Q13151 305 aaKnown RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 SHHQ15465 462 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 IQCCQ4KMZ1 466 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 ATXN7L2Q5T6C5 722 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 KIAA1614Q5VZ46 1190 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 LCN8Q6JVE9 175 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 MBOAT1Q6ZNC8 495 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 NRARPQ7Z6K4 114 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 C11orf65Q8NCR3 313 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 CHDHQ8NE62 594 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 LILRB4Q8NHJ6 448 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 AKAP1Q92667 903 aaKnown RBP eCLIP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 SMIM14Q96QK8 99 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 MGLLQ99685 303 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 TUBA1CQ9BQE3 449 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 C11orf84Q9BUA3 381 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-203ENST00000547825 CDADC1Q9BWV3 514 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 NFKBIZQ9BYH8 718 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 UCK2Q9BZX2 261 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 ANKRA2Q9H9E1 313 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 EQTNQ9NQ60 294 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 ARMC1Q9NVT9 282 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 BAIAP2Q9UQB8 552 aa5.26□□□□□ -1.57
LIMA1-203ENST00000547825 IFT52Q9Y366 437 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms