RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 HSD17B7P56937 341 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 BTN3A2P78410 334 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 CDK16Q00536 496 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 TIAL1Q01085 375 aaKnown RBP eCLIP11.76□□□□□ -0.53
SCAF11-208ENST00000546534 SLC13A2Q13183 592 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 SP140Q13342 867 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 BMPR2Q13873 1038 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 DHX34Q14147 1143 aaKnown RBP11.76□□□□□ -0.53
SCAF11-208ENST00000546534 CSHL1Q14406 222 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 TOR1AIP1Q5JTV8 583 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 SEL1L2Q5TEA6 688 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 DUPD1Q68J44 220 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 CASC4Q6P4E1 433 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 C4orf22Q6V702 233 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 CXorf67Q86X51 503 aaPredicted RBP11.76□□□□□ -0.53
SCAF11-208ENST00000546534 PALM2Q8IXS6 379 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 FBXW8Q8N3Y1 598 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 TRPV3Q8NET8 790 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 OR56A3Q8NH54 315 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 NEIL2Q969S2 332 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 SGCZQ96LD1 299 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 ADAP2Q9NPF8 381 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 TRMT6Q9UJA5 497 aaKnown RBP11.76□□□□□ -0.53
SCAF11-208ENST00000546534 ATG4BQ9Y4P1 393 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 PCDHGB3Q9Y5G1 929 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 COMMD10Q9Y6G5 202 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 COL6A5A8TX70 2615 aa11.76□□□□□ -0.53
SCAF11-208ENST00000546534 A0A0G2JN53 185 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 ZCWPW2A0A1B0GU75 182 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 A0A1W2PPR1 153 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 CLCA1A8K7I4 914 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 H7C1Q1 480 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 CLDN4O14493 209 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 ARHGEF9O43307 516 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 SERPINA6P08185 405 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 HIST1H2AGP0C0S8 130 aaPredicted RBP11.75□□□□□ -0.53
SCAF11-208ENST00000546534 TPSB2P20231 275 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 HIST1H2ADP20671 130 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 RGS4P49798 205 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 TERF1P54274 439 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 CCZ1BP86790 482 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 CCZ1P86791 482 aaPredicted RBP11.75□□□□□ -0.53
SCAF11-208ENST00000546534 REEP5Q00765 189 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 RBBP5Q15291 538 aaKnown RBP11.75□□□□□ -0.53
SCAF11-208ENST00000546534 SIX1Q15475 284 aaPredicted RBP11.75□□□□□ -0.53
SCAF11-208ENST00000546534 TPSAB1Q15661 275 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 ELAVL1Q15717 326 aaKnown RBP11.75□□□□□ -0.53
SCAF11-208ENST00000546534 LRRC8EQ6NSJ5 796 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 UGT3A1Q6NUS8 523 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 OPN5Q6U736 354 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 CLNKQ7Z7G1 428 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 KIAA1328Q86T90 577 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 KIF18BQ86Y91 864 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 VWA5B2Q8N398 1253 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 TMEM132CQ8N3T6 1108 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 ZNF321PQ8N8H1 164 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 FAM47BQ8NA70 645 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 RNF214Q8ND24 703 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 PTPMT1Q8WUK0 201 aaPredicted RBP11.75□□□□□ -0.53
SCAF11-208ENST00000546534 SLC5A11Q8WWX8 675 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 KIAA1191Q96A73 305 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 ZNF669Q96BR6 464 aaPredicted RBP11.75□□□□□ -0.53
SCAF11-208ENST00000546534 HIST1H2AHQ96KK5 128 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 TSNARE1Q96NA8 513 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 HIST1H2AJQ99878 128 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 H2AFJQ9BTM1 129 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 SLC6A15Q9H2J7 730 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 ARL15Q9NXU5 204 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 ZNF629Q9UEG4 869 aaPredicted RBP11.75□□□□□ -0.53
SCAF11-208ENST00000546534 ADAM21Q9UKJ8 722 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 CLCA3PQ9Y6N3 262 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.75□□□□□ -0.53
SCAF11-208ENST00000546534 RTTNQ86VV8 2226 aa11.75□□□□□ -0.53
SCAF11-208ENST00000546534 INAFM1C9JVW0 142 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 NRDCO43847 1150 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 EPPINO95925 133 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 HRGP04196 525 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 IFNA16P05015 189 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 TRPC1P48995 793 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 RAB38P57729 211 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 RNF4P78317 190 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 POU4F3Q15319 338 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 CCNG2Q16589 344 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 BBS9Q3SYG4 887 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 ACSF3Q4G176 576 aaPredicted RBP11.74□□□□□ -0.53
SCAF11-208ENST00000546534 Q5PR19 223 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 PAQR3Q6TCH7 311 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 VASH1Q7L8A9 365 aaPredicted RBP11.74□□□□□ -0.53
SCAF11-208ENST00000546534 GSTA5Q7RTV2 222 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 MAATS1Q7Z4T9 603 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 CAND1Q86VP6 1230 aaKnown RBP11.74□□□□□ -0.53
SCAF11-208ENST00000546534 MYO1HQ8N1T3 1032 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 MORN4Q8NDC4 146 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 NEIL3Q8TAT5 605 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 FBXL8Q96CD0 374 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 NDNQ99608 321 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 YIPF4Q9BSR8 244 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 OR8D2Q9GZM6 311 aa11.74□□□□□ -0.53
SCAF11-208ENST00000546534 ZNF703Q9H7S9 590 aaPredicted RBP11.74□□□□□ -0.53
SCAF11-208ENST00000546534 PELI2Q9HAT8 420 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms