RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 UBFD1O14562 309 aaKnown RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 CTIFO43310 598 aaKnown RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 OIP5O43482 229 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 CHST10O43529 356 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 PHF2O75151 1096 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 GPC4O75487 556 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 TRAPPC6AO75865 159 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 ZFAND5O76080 213 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 PROSCO94903 275 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 SOX30O94993 753 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 LRATO95237 230 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 CCNDBP1O95273 360 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 SYF2O95926 243 aaKnown RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 CCL3P10147 92 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 CREB1P16220 341 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 PECAM1P16284 738 aaPredicted RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 SRD5A1P18405 259 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 CD247P20963 164 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 JAK1P23458 1154 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 DPP4P27487 766 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 GDF1P27539 372 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 AOAHP28039 575 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 CDKN1AP38936 164 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 ECI1P42126 302 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 ATP5OP48047 213 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 KCNJ2P63252 427 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 PRDX1Q06830 199 aaKnown RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 FAM27E3Q08E93 113 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 BMPR2Q13873 1038 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 SLBPQ14493 270 aaKnown RBP eCLIP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 ITIH4Q14624 930 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 TOMM20Q15388 145 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 HYAL4Q2M3T9 481 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 C6orf52Q5T4I8 152 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 PRAMEF20Q5VT98 475 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 ERICH6BQ5W0A0 696 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 PTRHD1Q6GMV3 140 aaKnown RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 RANBP10Q6VN20 620 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 RTL4Q6ZR62 310 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 C1orf229Q6ZS94 237 aaPredicted RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 BZW1Q7L1Q6 419 aaKnown RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF550Q7Z398 422 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 LDB1Q86U70 411 aaPredicted RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 MTDHQ86UE4 582 aaKnown RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 GCNT2Q8N0V5 402 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 AGGF1Q8N302 714 aaeCLIP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 RASGEF1CQ8N431 466 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 ARHGEF39Q8N4T4 335 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 APCDD1LQ8NCL9 501 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 B3GNT7Q8NFL0 401 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 NEIL3Q8TAT5 605 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 ENOX1Q8TC92 643 aaKnown RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 MAGEC3Q8TD91 643 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 SLC13A3Q8WWT9 602 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 SMPDL3AQ92484 453 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 P3H4Q92791 437 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 KISS1RQ969F8 398 aaPredicted RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 NCLNQ969V3 563 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 TBC1D20Q96BZ9 403 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 FAM136AQ96C01 138 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 INTS12Q96CB8 462 aaKnown RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 TRMT61AQ96FX7 289 aaKnown RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 LCORQ96JN0 433 aaPredicted RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 SCYL1Q96KG9 808 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 CLUHP3Q96NS8 147 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 RASL10BQ96S79 203 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 TBL1YQ9BQ87 522 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 TMPRSS13Q9BYE2 586 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 KRTAP4-7Q9BYR0 210 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 GP6Q9HCN6 339 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 NECTIN3Q9NQS3 549 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 CGGBP1Q9UFW8 167 aaPredicted RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 TNPO3Q9Y5L0 923 aaKnown RBP4.38□□□□□ -1.71
LIMS1-214ENST00000542845 ACTL7BQ9Y614 415 aa4.38□□□□□ -1.71
LIMS1-214ENST00000542845 CCDC162PA2VCL2 907 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 FAM229AH3BQW9 127 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 PSMD12O00232 456 aaPredicted RBP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 CST8O60676 142 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 DNAJC8O75937 253 aaPredicted RBP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 ACSL3O95573 720 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 PLAUP00749 431 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 IFNA16P05015 189 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 CYP1A2P05177 515 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 PSMB4P28070 264 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 RBL1P28749 1068 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 NTF4P34130 210 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 ADRA1AP35348 466 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 HNF4AP41235 474 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 MC3RP41968 323 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 KCNJ5P48544 419 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 PNLIPRP1P54315 467 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 DIO3P55073 304 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 SRYQ05066 204 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 FOXO1Q12778 655 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 DUSP8Q13202 625 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 MSLNQ13421 630 aaPredicted RBP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF460Q14592 562 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 SF3B4Q15427 424 aaKnown RBP eCLIP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 DPY19L1Q2PZI1 675 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 FAM174BQ3ZCQ3 159 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms