RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CTSFQ9UBX1 484 aa16.52■□□□□ 0.24
CLSTN3-210ENST00000540931 C3orf18Q9UK00 162 aa16.52■□□□□ 0.24
CLSTN3-210ENST00000540931 MKL2Q9ULH7 1088 aa16.52■□□□□ 0.24
CLSTN3-210ENST00000540931 EIF3LQ9Y262 564 aaKnown RBP16.52■□□□□ 0.24
CLSTN3-210ENST00000540931 ZNF860A6NHJ4 632 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 IDSB3KWA1 339 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 PROM1O43490 865 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 PCDH7O60245 1069 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 CTNSO60931 367 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 SH3BGRLO75368 114 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 ANXA4P09525 319 aaPredicted RBP16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 PRPS2P11908 318 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 ICAM2P13598 275 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 ARRB2P32121 409 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 MDH1P40925 334 aaKnown RBP16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 HMGCS1Q01581 520 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 TNFRSF17Q02223 184 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 TLE3Q04726 772 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 ZNF763Q0D2J5 394 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 RUNX2Q13950 521 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 MINDY4Q4G0A6 757 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 MFSD4BQ5TF39 518 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 ZNF793Q6ZN11 406 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 Q6ZSR9 355 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 ZC3H7AQ8IWR0 971 aaKnown RBP16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 EFCAB3Q8N7B9 438 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 C11orf24Q96F05 449 aaPredicted RBP16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 CRELD1Q96HD1 420 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 FER1L6-AS2Q96M78 137 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 HBEGFQ99075 208 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 ZNF717Q9BY31 904 aaPredicted RBP16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 C20orf27Q9GZN8 174 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 RPF2Q9H7B2 306 aaKnown RBP16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 AKIRIN1Q9H9L7 192 aaPredicted RBP16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 TNFRSF12AQ9NP84 129 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 EHD3Q9NZN3 535 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 KCMF1Q9P0J7 381 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 CCL27Q9Y4X3 112 aa16.51■□□□□ 0.23
CLSTN3-210ENST00000540931 A0A0G2JN53 185 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 RTCAO00442 366 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 CYR61O00622 381 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 LSM1O15116 133 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 DYRK3O43781 588 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 SKAP2O75563 359 aaPredicted RBP16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 ZIC2O95409 532 aaPredicted RBP16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 C8orf89P0DMQ9 161 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 NR2F6P10588 404 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 TPP2P29144 1249 aaPredicted RBP16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 MAT1AQ00266 395 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 VAC14Q08AM6 782 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 VWA2Q5GFL6 755 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 OR52E8Q6IFG1 317 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 LCN10Q6JVE6 187 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 NOXRED1Q6NXP6 359 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 RNF175Q8N4F7 328 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 NATD1Q8N6N6 113 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 SNRNP27Q8WVK2 155 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 TUBB1Q9H4B7 451 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 PRTFDC1Q9NRG1 225 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 RYDENQ9NUL5 291 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 ASIC5Q9NY37 505 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 NOP53Q9NZM5 478 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 FBXW2Q9UKT8 454 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 POLHQ9Y253 713 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 ASB4Q9Y574 426 aa16.5■□□□□ 0.23
CLSTN3-210ENST00000540931 ASH1LQ9NR48 2969 aaKnown RBP16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 A0A1W2PQ72 361 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 EIF4E1BA6NMX2 242 aaKnown RBP16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 TMEM233B4DJY2 109 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 C4orf51C9J302 202 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 EFSO43281 561 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 ALOX12BO75342 701 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 EEDO75530 441 aaKnown RBP16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 TROVE2P10155 538 aaKnown RBP eCLIP16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 LBPP18428 481 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 ERVK-8P63133 956 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 EMX2Q04743 252 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 BTKQ06187 659 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 STX4Q12846 297 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 SLC13A2Q13183 592 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 KIAA0040Q15053 153 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 TERF2Q15554 542 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 NSDHLQ15738 373 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 PDCD2Q16342 344 aaPredicted RBP16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 CES4AQ5XG92 561 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 SCIMPQ6UWF3 145 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 ACAD11Q709F0 780 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 R3HCC1LQ7Z5L2 792 aaKnown RBP16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 SPATA19Q7Z5L4 167 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 TMEM132CQ8N3T6 1108 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 TMEM102Q8N9M5 508 aaPredicted RBP16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 FNDC5Q8NAU1 212 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 OR5T3Q8NGG3 340 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 CEP70Q8NHQ1 597 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 MTERF3Q96E29 417 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 APIPQ96GX9 242 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 ZNF764Q96H86 408 aaPredicted RBP16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 FCRL1Q96LA6 429 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 PTCHD1Q96NR3 888 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms