RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 C1orf21Q9H246 121 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 OR51I1Q9H343 314 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 ZNF222Q9UK12 451 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 LIPT1Q9Y234 373 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 E7EQ34 232 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 ZNF208O43345 1280 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 RAB25P57735 213 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 HSF2Q03933 536 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 DOK4Q8TEW6 326 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 SEC14L1Q92503 715 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 FCGR1BQ92637 280 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 CRELD1Q96HD1 420 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 GAL3ST1Q99999 423 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 GINS4Q9BRT9 223 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 CXCL16Q9H2A7 254 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 ANKMY1Q9P2S6 941 aa13.53□□□□□ -0.24
USP3-204ENST00000540797 DNMT3AQ9Y6K1 912 aaPredicted RBP13.53□□□□□ -0.24
USP3-204ENST00000540797 ZNF821O75541 412 aaPredicted RBP13.52□□□□□ -0.24
USP3-204ENST00000540797 EIF1AXP47813 144 aaKnown RBP13.52□□□□□ -0.24
USP3-204ENST00000540797 KCNC4Q03721 635 aa13.52□□□□□ -0.24
USP3-204ENST00000540797 FCHO2Q0JRZ9 810 aa13.52□□□□□ -0.24
USP3-204ENST00000540797 NR0B2Q15466 257 aa13.52□□□□□ -0.24
USP3-204ENST00000540797 TMEM240Q5SV17 173 aa13.52□□□□□ -0.24
USP3-204ENST00000540797 TMEM225Q6GV28 225 aa13.52□□□□□ -0.24
USP3-204ENST00000540797 NANOGP8Q6NSW7 305 aa13.52□□□□□ -0.24
USP3-204ENST00000540797 GPAT4Q86UL3 456 aa13.52□□□□□ -0.24
USP3-204ENST00000540797 TDHQ8IZJ6 230 aa13.52□□□□□ -0.24
USP3-204ENST00000540797 GPR150Q8NGU9 434 aa13.52□□□□□ -0.24
USP3-204ENST00000540797 NANOGQ9H9S0 305 aa13.52□□□□□ -0.24
USP3-204ENST00000540797 EPHA6Q9UF33 1036 aa13.52□□□□□ -0.24
USP3-204ENST00000540797 F11P03951 625 aa13.52□□□□□ -0.24
USP3-204ENST00000540797 CD38P28907 300 aa13.52□□□□□ -0.24
USP3-204ENST00000540797 ISCA2Q86U28 154 aa13.52□□□□□ -0.24
USP3-204ENST00000540797 PDZD3Q86UT5 571 aa13.52□□□□□ -0.24
USP3-204ENST00000540797 RBM12BQ8IXT5 1001 aaKnown RBP13.52□□□□□ -0.24
USP3-204ENST00000540797 CNDP2Q96KP4 475 aaKnown RBP13.52□□□□□ -0.24
USP3-204ENST00000540797 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.52□□□□□ -0.25
USP3-204ENST00000540797 RPP14O95059 124 aaKnown RBP13.52□□□□□ -0.25
USP3-204ENST00000540797 CLUP10909 449 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 PTNP21246 168 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 ARF5P84085 180 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 FADDQ13158 208 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 PKDCCQ504Y2 493 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 ALG1LQ6GMV1 187 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 NADSYN1Q6IA69 706 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 LRRC17Q8N6Y2 441 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 YIPF7Q8N8F6 280 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 TMEM174Q8WUU8 243 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 MYLIPQ8WY64 445 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 LPAR4Q99677 370 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 CD320Q9NPF0 282 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 TRPV5Q9NQA5 729 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 AIG1Q9NVV5 245 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 ACTR10Q9NZ32 417 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 CCL26Q9Y258 94 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 ZNF670-ZNF695F2Z2N8 137 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 AURKAO14965 403 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 GMPRP36959 345 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 ATG9BQ674R7 924 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 GAREM2Q75VX8 874 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 RTN4RL1Q86UN2 441 aaPredicted RBP13.52□□□□□ -0.25
USP3-204ENST00000540797 OR8J3Q8NGG0 315 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 TRIM8Q9BZR9 551 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 BHLHE41Q9C0J9 482 aaPredicted RBP13.52□□□□□ -0.25
USP3-204ENST00000540797 TM9SF3Q9HD45 589 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 SIT1Q9Y3P8 196 aa13.52□□□□□ -0.25
USP3-204ENST00000540797 KIR2DS5A0A0G2JLQ3 304 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 A0A0G2JNG1 304 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 KIR2DS3K7RE56 304 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 OR1E2P47887 323 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 PMS2P3Q13401 168 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 KIR2DS5Q14953 304 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 TPRG1LQ5T0D9 272 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 FAM69BQ5VUD6 431 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 CD200R1Q8TD46 325 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 THEM6Q8WUY1 208 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 SLC39A13Q96H72 371 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 PCTPQ9UKL6 214 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 TBX1O43435 398 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 SOX30O94993 753 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 SOX14O95416 240 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 RPLP0P05388 317 aaKnown RBP13.51□□□□□ -0.25
USP3-204ENST00000540797 EDNRAP25101 427 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 C6orf120Q7Z4R8 191 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 TMEM173Q86WV6 379 aaPredicted RBP13.51□□□□□ -0.25
USP3-204ENST00000540797 PDPRQ8NCN5 879 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 OR56A3Q8NH54 315 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 KAT8Q9H7Z6 458 aaKnown RBP13.51□□□□□ -0.25
USP3-204ENST00000540797 MTMR10Q9NXD2 777 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 TAS2R7Q9NYW3 318 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 HOXD8P13378 290 aaPredicted RBP13.51□□□□□ -0.25
USP3-204ENST00000540797 IVDP26440 423 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 RORAP35398 523 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 MADCAM1Q13477 382 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 ZNF789Q5FWF6 425 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 DUS1LQ6P1R4 473 aaKnown RBP13.51□□□□□ -0.25
USP3-204ENST00000540797 GALNTL5Q7Z4T8 443 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 CARM1Q86X55 608 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 PACRGLQ8N7B6 248 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 CXorf21Q9HAI6 301 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms