RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 SETD7Q8WTS6 366 aaKnown RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 FRS2Q8WU20 508 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 MRPS31Q92665 395 aaKnown RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 DNASE1L2Q92874 299 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 ADAD1Q96M93 576 aaKnown RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 MAGIXQ9H6Y5 334 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 WDR26Q9H7D7 661 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 LOC285095A0A1B0GVY8 99 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 ANKUB1A6NFN9 424 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 TRIM77I1YAP6 450 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 WNT7AO00755 349 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 SDHDO14521 159 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 RAF1P04049 648 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 TYRP14679 529 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 SORDQ00796 357 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 PGM5Q15124 567 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 BEX5Q5H9J7 111 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 FAM46CQ5VWP2 391 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 ZNF783Q6ZMS7 281 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 FAM185AQ8N0U4 392 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 GAL3ST4Q96RP7 486 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 WDR77Q9BQA1 342 aaPredicted RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 AGO4Q9HCK5 861 aaKnown RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 ATXN7L1Q9ULK2 861 aaPredicted RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 PCDHB1Q9Y5F3 818 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 A0A1W2PPK0 400 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 A0A1W2PS29 197 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 FAM170BA6NMN3 283 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 ONECUT3O60422 494 aaPredicted RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 SIX3O95343 332 aaPredicted RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 PTBP3O95758 552 aaKnown RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 NME1P15531 152 aaKnown RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 AXLP30530 894 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 ZNF41P51814 821 aaPredicted RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 RPL23AP62750 156 aaKnown RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 SELENBP1Q13228 472 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 GINS1Q14691 196 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 INAVAQ3KP66 663 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 FAM209BQ5JX69 171 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 OR4F3Q6IEY1 312 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 RETSATQ6NUM9 610 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 TNFAIP8L2Q6P589 184 aaPredicted RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 RHOUQ7L0Q8 258 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 OR4E2Q8NGC2 313 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 OR6S1Q8NH40 331 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 BSCL2Q96G97 398 aaPredicted RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 SEC22CQ9BRL7 303 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 MED18Q9BUE0 208 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 SAP130Q9H0E3 1048 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 ZFP57Q9NU63 452 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 VSX1Q9NZR4 365 aaPredicted RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 GMPR2Q9P2T1 348 aaKnown RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 TCHHQ07283 1943 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 ZNF670-ZNF695F2Z2N8 137 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 MT-ND4P03905 459 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 DPP6P42658 865 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 ETV4P43268 484 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 CXCR3P49682 368 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 HCCSP53701 268 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 BEX3Q00994 111 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 CHRNEQ04844 493 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 HSPB3Q12988 150 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 CYP27C1Q4G0S4 372 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 GLT8D1Q68CQ7 371 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 HS3ST5Q8IZT8 346 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 KCT2Q8NC54 265 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 OR51G2Q8NGK0 314 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 NECTIN4Q96NY8 510 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 AIG1Q9NVV5 245 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 PHOX2AO14813 284 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 ZNF208O43345 1280 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 MAKP20794 623 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 DNAJB1P25685 340 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 ART1P52961 327 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 ARHGAP1Q07960 439 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 KEAP1Q14145 624 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 MFSD13AQ14CX5 517 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 ZPBP2Q6X784 338 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 USP51Q70EK9 711 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 XYLT1Q86Y38 959 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 CDK15Q96Q40 435 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 SLC35A5Q9BS91 424 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 SLC19A3Q9BZV2 496 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 LHX5Q9H2C1 402 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 PATZ1Q9HBE1 687 aaKnown RBP8.43□□□□□ -1.06
YBX3-208ENST00000540447 PARPBPQ9NWS1 579 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 PRSS51A0A1B0GVH4 220 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 LACTBL1A8MY62 500 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 NRP1O14786 923 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 KCNK2O95069 426 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 AMY2AP04746 511 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 PPM1AP35813 382 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 NRIP1P48552 1158 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 SPP2Q13103 211 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 LASP1Q14847 261 aaKnown RBP8.43□□□□□ -1.06
YBX3-208ENST00000540447 FAM117BQ6P1L5 589 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 KCNIP4Q6PIL6 250 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 RHBDF2Q6PJF5 856 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 LCLAT1Q6UWP7 414 aa8.43□□□□□ -1.06
YBX3-208ENST00000540447 GPR149Q86SP6 731 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms