RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 GPR37L1O60883 481 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 OCM2P0CE71 109 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 OCMP0CE72 109 aaPredicted RBP16.1■□□□□ 0.17
USP28-208ENST00000540438 GJA4P35212 333 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 CLK1P49759 484 aaKnown RBP16.1■□□□□ 0.17
USP28-208ENST00000540438 KCNC3Q14003 757 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 GPR19Q15760 415 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 IFI44LQ53G44 452 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 PNCKQ6P2M8 343 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 SLC9B2Q86UD5 537 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 SFTPA2Q8IWL1 248 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 SIMC1Q8NDZ2 872 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 OR4D11Q8NGI4 311 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 COL26A1Q96A83 441 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 RAD51AP1Q96B01 352 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 TMEM19Q96HH6 336 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 COL21A1Q96P44 957 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 ZNF300Q96RE9 604 aaPredicted RBP16.1■□□□□ 0.17
USP28-208ENST00000540438 INSM2Q96T92 566 aaPredicted RBP16.1■□□□□ 0.17
USP28-208ENST00000540438 EFCAB11Q9BUY7 163 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 MKRN2Q9H000 416 aaKnown RBP16.1■□□□□ 0.17
USP28-208ENST00000540438 OR51E2Q9H255 320 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 MS4A12Q9NXJ0 267 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 DKK3Q9UBP4 350 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 IL20RAQ9UHF4 553 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 CDH7Q9ULB5 785 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 CAB39Q9Y376 341 aaPredicted RBP16.1■□□□□ 0.17
USP28-208ENST00000540438 PCDHGB3Q9Y5G1 929 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 ALPK2Q86TB3 2170 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 C4orf51C9J302 202 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 KAT7O95251 611 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 GADD45GO95257 159 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 SEMG1P04279 462 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 TNNI3P19429 210 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 GADD45AP24522 165 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 TBC1D25Q3MII6 688 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 ERICH5Q6P6B1 374 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 VITQ6UXI7 678 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 GPR155Q7Z3F1 870 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 RASGRP3Q8IV61 690 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.1■□□□□ 0.17
USP28-208ENST00000540438 RNF31Q96EP0 1072 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 FCRL1Q96LA6 429 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 YTHDF1Q9BYJ9 559 aaKnown RBP16.1■□□□□ 0.17
USP28-208ENST00000540438 CAPN10Q9HC96 672 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 DNAJC27Q9NZQ0 273 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 BTNL2Q9UIR0 455 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 ARID1BQ8NFD5 2236 aaPredicted RBP16.1■□□□□ 0.17
USP28-208ENST00000540438 RNASET2O00584 256 aaKnown RBP16.09■□□□□ 0.17
USP28-208ENST00000540438 FFAR1O14842 300 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 PGRMC2O15173 223 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 JRKO75564 520 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 PTHP01270 115 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 AK4P27144 223 aaPredicted RBP16.09■□□□□ 0.17
USP28-208ENST00000540438 TTKP33981 857 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 RYKP34925 604 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 SEC23BQ15437 767 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 MED22Q15528 200 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 CCDC116Q8IYX3 515 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 SETD9Q8NE22 299 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 CCL4L1Q8NHW4 92 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 ZCCHC2Q9C0B9 1178 aaKnown RBP16.09■□□□□ 0.17
USP28-208ENST00000540438 LMCD1Q9NZU5 365 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 LINC00854A0A1B0GVQ3 168 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 EFCAB14O75071 495 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 SRPRAP08240 638 aaKnown RBP16.09■□□□□ 0.17
USP28-208ENST00000540438 INHBBP09529 407 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 SLC35G4P0C7Q5 338 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 DSTNP60981 165 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 ELP6Q0PNE2 266 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 MLF2Q15773 248 aaPredicted RBP16.09■□□□□ 0.17
USP28-208ENST00000540438 ZNF829Q3KNS6 432 aaPredicted RBP16.09■□□□□ 0.17
USP28-208ENST00000540438 ZNF658BQ4V348 819 aaPredicted RBP16.09■□□□□ 0.17
USP28-208ENST00000540438 C1orf53Q5VUE5 145 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 OR4N5Q8IXE1 308 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 PSMA8Q8TAA3 256 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 ZG16BQ96DA0 208 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 OR5M11Q96RB7 305 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 NLNQ9BYT8 704 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 DNAAF2Q9NVR5 837 aaKnown RBP16.09■□□□□ 0.17
USP28-208ENST00000540438 TRNAU1APQ9NX07 287 aaKnown RBP16.09■□□□□ 0.17
USP28-208ENST00000540438 SPHK1Q9NYA1 384 aa16.09■□□□□ 0.17
USP28-208ENST00000540438 ANKRD33BA6NCL7 494 aa16.08■□□□□ 0.17
USP28-208ENST00000540438 ANHXE9PGG2 379 aa16.08■□□□□ 0.17
USP28-208ENST00000540438 NPIPB8E9PQR5 432 aa16.08■□□□□ 0.17
USP28-208ENST00000540438 WWP2O00308 870 aa16.08■□□□□ 0.17
USP28-208ENST00000540438 SLC28A2O43868 658 aa16.08■□□□□ 0.17
USP28-208ENST00000540438 DDX6P26196 483 aaKnown RBP eCLIP16.08■□□□□ 0.17
USP28-208ENST00000540438 GDI1P31150 447 aa16.08■□□□□ 0.17
USP28-208ENST00000540438 TGM4P49221 684 aa16.08■□□□□ 0.17
USP28-208ENST00000540438 MLLT1Q03111 559 aaPredicted RBP16.08■□□□□ 0.17
USP28-208ENST00000540438 PIP5KL1Q5T9C9 394 aa16.08■□□□□ 0.17
USP28-208ENST00000540438 METTL4Q8N3J2 472 aa16.08■□□□□ 0.17
USP28-208ENST00000540438 GGHQ92820 318 aa16.08■□□□□ 0.17
USP28-208ENST00000540438 FGF14Q92915 247 aa16.08■□□□□ 0.17
USP28-208ENST00000540438 SMARCD2Q92925 531 aa16.08■□□□□ 0.17
USP28-208ENST00000540438 SH3YL1Q96HL8 342 aaPredicted RBP16.08■□□□□ 0.17
USP28-208ENST00000540438 Q96MT0 163 aa16.08■□□□□ 0.17
USP28-208ENST00000540438 TEFMQ96QE5 360 aaKnown RBP16.08■□□□□ 0.17
USP28-208ENST00000540438 LHX9Q9NQ69 397 aa16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms