RNA–Protein interactions for RNA: ENST00000538834.5

CD9-208, Transcript of CD9 molecule, human

TSL 5

Gene CD9, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD9-208	ENST00000538834	SAGE2P	A6NJ88	616 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	SLC28A2	O43868	658 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	TYROBP	O43914	113 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	TMPRSS11D	O60235	418 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	PDYN	P01213	254 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	HSD3B1	P14060	373 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	TSPAN8	P19075	237 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	HSD3B2	P26439	372 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	TPP2	P29144	1249 aa	Predicted RBP	12.83	□□□□□ -0.36
CD9-208	ENST00000538834	PKNOX1	P55347	436 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	OR4D2	P58180	307 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	FOXK1	P85037	733 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	TLE1	Q04724	770 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	ZNF844	Q08AG5	666 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	GALNT1	Q10472	559 aa	Predicted RBP	12.83	□□□□□ -0.36
CD9-208	ENST00000538834	LCP2	Q13094	533 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	PCLAF	Q15004	111 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	FRMD7	Q6ZUT3	714 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	LGI4	Q8N135	537 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	C4orf33	Q8N1A6	199 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	AGAP11	Q8TF27	550 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	ATP6V1E2	Q96A05	226 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	MIB2	Q96AX9	1013 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	APOPT1	Q96IL0	206 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	LPAR4	Q99677	370 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	PRTFDC1	Q9NRG1	225 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	SIRT5	Q9NXA8	310 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	MS4A12	Q9NXJ0	267 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	ZNF223	Q9UK11	482 aa	Predicted RBP	12.83	□□□□□ -0.36
CD9-208	ENST00000538834	PLAA	Q9Y263	795 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	B3GNT3	Q9Y2A9	372 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	ATG4B	Q9Y4P1	393 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	NUP214	P35658	2090 aa	Predicted RBP	12.83	□□□□□ -0.36
CD9-208	ENST00000538834	FREM3	P0C091	2139 aa		12.83	□□□□□ -0.36
CD9-208	ENST00000538834	NIN	Q8N4C6	2090 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	SMIM23	A6NLE4	172 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	NPIPB8	E9PQR5	432 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834		J3QKU1	62 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	PSMD12	O00232	456 aa	Predicted RBP	12.82	□□□□□ -0.36
CD9-208	ENST00000538834	SAP18	O00422	153 aa	Known RBP	12.82	□□□□□ -0.36
CD9-208	ENST00000538834	CLDN4	O14493	209 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	COPE	O14579	308 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	ESRRB	O95718	433 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	MLYCD	O95822	493 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	CPA3	P15088	417 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	CREB1	P16220	341 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	ETV4	P43268	484 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	SLAMF1	Q13291	335 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	DDX39B	Q13838	428 aa	Known RBP	12.82	□□□□□ -0.36
CD9-208	ENST00000538834	RCN2	Q14257	317 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	B3GNTL1	Q67FW5	361 aa	Predicted RBP	12.82	□□□□□ -0.36
CD9-208	ENST00000538834	RPUSD3	Q6P087	351 aa	Known RBP	12.82	□□□□□ -0.36
CD9-208	ENST00000538834	RNF165	Q6ZSG1	346 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	CUZD1	Q86UP6	607 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	GPR180	Q86V85	440 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	C7orf57	Q8NEG2	295 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	PTPMT1	Q8WUK0	201 aa	Predicted RBP	12.82	□□□□□ -0.36
CD9-208	ENST00000538834	CHTF18	Q8WVB6	975 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	TRIM45	Q9H8W5	580 aa	Predicted RBP	12.82	□□□□□ -0.36
CD9-208	ENST00000538834	COPS7B	Q9H9Q2	264 aa	Predicted RBP	12.82	□□□□□ -0.36
CD9-208	ENST00000538834	TNFRSF12A	Q9NP84	129 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	MRPS33	Q9Y291	106 aa	Known RBP	12.82	□□□□□ -0.36
CD9-208	ENST00000538834	STK38L	Q9Y2H1	464 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	PCDHGA10	Q9Y5H3	936 aa		12.82	□□□□□ -0.36
CD9-208	ENST00000538834	HEMK1	Q9Y5R4	338 aa	Predicted RBP	12.82	□□□□□ -0.36
CD9-208	ENST00000538834	USP9X	Q93008	2570 aa	Predicted RBP	12.82	□□□□□ -0.36
CD9-208	ENST00000538834		A0A1W2PR48	441 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	TLDC2	A0PJX2	215 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	TMEM200C	A6NKL6	621 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834		H3BQF6	201 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	MANBA	O00462	879 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	SH3BGRL	O75368	114 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	ENO1	P06733	434 aa	Known RBP	12.81	□□□□□ -0.36
CD9-208	ENST00000538834	MYL2	P10916	166 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	PPP2R1B	P30154	601 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	SSR2	P43308	183 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	NAGLU	P54802	743 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	PHEX	P78562	749 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	TNFRSF17	Q02223	184 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	IFT88	Q13099	833 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	BIK	Q13323	160 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	BTBD16	Q32M84	506 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	MFSD4B	Q5TF39	518 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	C18orf63	Q68DL7	685 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	GPRIN3	Q6ZVF9	776 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	MYLK4	Q86YV6	388 aa	Predicted RBP	12.81	□□□□□ -0.36
CD9-208	ENST00000538834	ZADH2	Q8N4Q0	377 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	SIRT6	Q8N6T7	355 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	FAM47B	Q8NA70	645 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	B3GNT7	Q8NFL0	401 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	DNAJB14	Q8TBM8	379 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	TM9SF4	Q92544	642 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	TANK	Q92844	425 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	MTFMT	Q96DP5	389 aa	Known RBP	12.81	□□□□□ -0.36
CD9-208	ENST00000538834	ADAP2	Q9NPF8	381 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	LYAR	Q9NX58	379 aa	Known RBP	12.81	□□□□□ -0.36
CD9-208	ENST00000538834	PHF11	Q9UIL8	331 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	SNX6	Q9UNH7	406 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	CCL27	Q9Y4X3	112 aa		12.81	□□□□□ -0.36
CD9-208	ENST00000538834	PCDHGB6	Q9Y5F9	930 aa		12.81	□□□□□ -0.36

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