RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 A0A0A6YYD5 115 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 CLDN4O14493 209 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 ENO1P06733 434 aaKnown RBP14.11□□□□□ -0.15
CPSF1-208ENST00000532560 CELA2AP08217 269 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 BSGP35613 385 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 SOX11P35716 441 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 CASRP41180 1078 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 HNRNPFP52597 415 aaKnown RBP14.11□□□□□ -0.15
CPSF1-208ENST00000532560 PCLAFQ15004 111 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 CRB2Q5IJ48 1285 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 PAPD4Q6PIY7 484 aaKnown RBP14.11□□□□□ -0.15
CPSF1-208ENST00000532560 IGFL2Q6UWQ7 119 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 FRMD7Q6ZUT3 714 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 NUDT13Q86X67 352 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 CDYL2Q8N8U2 506 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 TEX19Q8NA77 164 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 TMEM52Q8NDY8 209 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 SMC6Q96SB8 1091 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 SORBS1Q9BX66 1292 aaKnown RBP14.11□□□□□ -0.15
CPSF1-208ENST00000532560 DDX31Q9H8H2 851 aaKnown RBP14.11□□□□□ -0.15
CPSF1-208ENST00000532560 BRF2Q9HAW0 419 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 NECTIN3Q9NQS3 549 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 PRTFDC1Q9NRG1 225 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 OXSMQ9NWU1 459 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 MS4A12Q9NXJ0 267 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 PHF11Q9UIL8 331 aa14.11□□□□□ -0.15
CPSF1-208ENST00000532560 EEDO75530 441 aaKnown RBP14.1□□□□□ -0.15
CPSF1-208ENST00000532560 ESRRBO95718 433 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 KRT6AP02538 564 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 KRT6BP04259 564 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 MYZAPP0CAP1 466 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 ITGAMP11215 1152 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 HSD3B1P14060 373 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 HSD3B2P26439 372 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 KRT6CP48668 564 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 NAGLUP54802 743 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 SLC26A5P58743 744 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 ZNF33BQ06732 778 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 ACTN3Q08043 901 aaPredicted RBP14.1□□□□□ -0.15
CPSF1-208ENST00000532560 MFAP5Q13361 173 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 BTBD16Q32M84 506 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 AGBL2Q5U5Z8 902 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 LIPMQ5VYY2 423 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 MRM1Q6IN84 353 aaKnown RBP14.1□□□□□ -0.15
CPSF1-208ENST00000532560 ISLR2Q6UXK2 745 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 ATG14Q6ZNE5 492 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 PRICKLE2Q7Z3G6 844 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 ZNF605Q86T29 641 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 CCNYL1Q8N7R7 359 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 RBMXL3Q8N7X1 1067 aaKnown RBP14.1□□□□□ -0.15
CPSF1-208ENST00000532560 M1APQ8TC57 530 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 BRIX1Q8TDN6 353 aaKnown RBP14.1□□□□□ -0.15
CPSF1-208ENST00000532560 AGAP11Q8TF27 550 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 SELENOMQ8WWX9 145 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 PSMF1Q92530 271 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 MTFMTQ96DP5 389 aaKnown RBP14.1□□□□□ -0.15
CPSF1-208ENST00000532560 ATP6V1G3Q96LB4 118 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 EPS8L2Q9H6S3 715 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 MMP25Q9NPA2 562 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 FARSBQ9NSD9 589 aaKnown RBP14.1□□□□□ -0.15
CPSF1-208ENST00000532560 LYARQ9NX58 379 aaKnown RBP14.1□□□□□ -0.15
CPSF1-208ENST00000532560 GCN1Q92616 2671 aaKnown RBP14.1□□□□□ -0.15
CPSF1-208ENST00000532560 SCN2AQ99250 2005 aa14.1□□□□□ -0.15
CPSF1-208ENST00000532560 SAGE2PA6NJ88 616 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 TGFBR3LH3BV60 316 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 MANBAO00462 879 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 RGS16O15492 202 aaPredicted RBP14.09□□□□□ -0.15
CPSF1-208ENST00000532560 SLC28A2O43868 658 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 PDYNP01213 254 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 CPN2P22792 545 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 HMOX2P30519 316 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 TNFRSF17Q02223 184 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 CSTF3Q12996 717 aaKnown RBP14.09□□□□□ -0.15
CPSF1-208ENST00000532560 SLC13A2Q13183 592 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 SLAMF1Q13291 335 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 NADK2Q4G0N4 442 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 SGO1Q5FBB7 561 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 CFAP157Q5JU67 520 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 GPR180Q86V85 440 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 C10orf107Q8IVU9 208 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 EFCAB3Q8N7B9 438 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 PNPLA2Q96AD5 504 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 FAM111AQ96PZ2 611 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 LMF1Q96S06 567 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 MID1IP1Q9NPA3 183 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 AHSPQ9NZD4 102 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 SLC17A7Q9P2U7 560 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 ADAM29Q9UKF5 820 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 FBXW2Q9UKT8 454 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 SLC12A4Q9UP95 1085 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 ZNF462Q96JM2 2506 aa14.09□□□□□ -0.15
CPSF1-208ENST00000532560 CPAMD8Q8IZJ3 1885 aa14.08□□□□□ -0.16
CPSF1-208ENST00000532560 UBFD1O14562 309 aaKnown RBP14.08□□□□□ -0.16
CPSF1-208ENST00000532560 TYROBPO43914 113 aa14.08□□□□□ -0.16
CPSF1-208ENST00000532560 TMPRSS11DO60235 418 aa14.08□□□□□ -0.16
CPSF1-208ENST00000532560 CTNSO60931 367 aa14.08□□□□□ -0.16
CPSF1-208ENST00000532560 ULK1O75385 1050 aa14.08□□□□□ -0.16
CPSF1-208ENST00000532560 SPAG7O75391 227 aa14.08□□□□□ -0.16
CPSF1-208ENST00000532560 SORBS2O94875 1100 aaKnown RBP14.08□□□□□ -0.16
CPSF1-208ENST00000532560 PLA2G2AP14555 144 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms