RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 NDUFS4O43181 175 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 ZFAND5O76080 213 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 RFPL3SP0C7P2 107 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 TMIGD3P0DMS9 266 aaPredicted RBP7.54□□□□□ -1.2
CD44-232ENST00000531118 ALOX12P18054 663 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 COMTP21964 271 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 RPS3P23396 243 aaKnown RBP eCLIP7.54□□□□□ -1.2
CD44-232ENST00000531118 LOXP28300 417 aaPredicted RBP7.54□□□□□ -1.2
CD44-232ENST00000531118 IMPA1P29218 277 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 PPP2R1BP30154 601 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 CCKARP32238 428 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 CPOXP36551 454 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 HSD17B2P37059 387 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 PIGAP37287 484 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 SLC1A1P43005 524 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 MARCKSL1P49006 195 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 GPR143P51810 404 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 EIF3BP55884 814 aaKnown RBP7.54□□□□□ -1.2
CD44-232ENST00000531118 ATP5J2P56134 94 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 SKP1P63208 163 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 PRAMEP78395 509 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 ACVR1Q04771 509 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 KCNJ11Q14654 390 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 STX1AQ16623 288 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 CLEC12BQ2HXU8 276 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 RNF187Q5TA31 235 aaPredicted RBP7.54□□□□□ -1.2
CD44-232ENST00000531118 RBM43Q6ZSC3 357 aaKnown RBP7.54□□□□□ -1.2
CD44-232ENST00000531118 SCUBE1Q8IWY4 988 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 LRRC25Q8N386 305 aaPredicted RBP7.54□□□□□ -1.2
CD44-232ENST00000531118 C9orf106Q8NAJ2 232 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 SLC35G2Q8TBE7 412 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 ACTL9Q8TC94 416 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 TMEM171Q8WVE6 324 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 SLC13A3Q8WWT9 602 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 ROBO4Q8WZ75 1007 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 TRIB1Q96RU8 372 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 FAM118BQ9BPY3 351 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 SFXN3Q9BWM7 321 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 PLA2G12AQ9BZM1 189 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 PRDM14Q9GZV8 571 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 CXorf56Q9H5V9 222 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 NPHS2Q9NP85 383 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 CATSPERZQ9NTU4 200 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 TMEM184CQ9NVA4 438 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 MYOTQ9UBF9 498 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 CDC42EP3Q9UKI2 254 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 RIMKLBQ9ULI2 386 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 BOKQ9UMX3 212 aaPredicted RBP7.54□□□□□ -1.2
CD44-232ENST00000531118 MMACHCQ9Y4U1 282 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 MALRD1Q5VYJ5 2156 aa7.54□□□□□ -1.2
CD44-232ENST00000531118 TRRAPQ9Y4A5 3859 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 PRR14LQ5THK1 2151 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 PSMD12O00232 456 aaPredicted RBP7.53□□□□□ -1.2
CD44-232ENST00000531118 PJA2O43164 708 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 CEP104O60308 925 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 ZNF354AO60765 605 aaPredicted RBP7.53□□□□□ -1.2
CD44-232ENST00000531118 NIPSNAP2O75323 286 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 ZNF888P0CJ79 500 aaPredicted RBP7.53□□□□□ -1.2
CD44-232ENST00000531118 RBP3P10745 1247 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 RNH1P13489 461 aaKnown RBP7.53□□□□□ -1.2
CD44-232ENST00000531118 CRYGSP22914 178 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 HRH2P25021 359 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 ANP32AP39687 249 aaKnown RBP7.53□□□□□ -1.2
CD44-232ENST00000531118 TTPAP49638 278 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 GSK3AP49840 483 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 EIF3EP60228 445 aaKnown RBP7.53□□□□□ -1.2
CD44-232ENST00000531118 KCNJ2P63252 427 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 ACSBG2Q5FVE4 666 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 C6orf52Q5T4I8 152 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 HECTD2Q5U5R9 776 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 PRAMEF20Q5VT98 475 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 CAPN13Q6MZZ7 669 aaPredicted RBP7.53□□□□□ -1.2
CD44-232ENST00000531118 NIPAL1Q6NVV3 410 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 DNAJC14Q6Y2X3 702 aaPredicted RBP7.53□□□□□ -1.2
CD44-232ENST00000531118 LRRC6Q86X45 466 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 RHOT2Q8IXI1 618 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 PM20D2Q8IYS1 436 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 KATNAL2Q8IYT4 538 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 RASGEF1CQ8N431 466 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 ZNF441Q8N8Z8 693 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 MFSD9Q8NBP5 474 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 OR52K1Q8NGK4 314 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 FAM136AQ96C01 138 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 MARK4Q96L34 752 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 SGCZQ96LD1 299 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 ZNF778Q96MU6 729 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 ANP32EQ9BTT0 268 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 HEMGNQ9BXL5 484 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 REG4Q9BYZ8 158 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 FAM129AQ9BZQ8 928 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 LACRTQ9GZZ8 138 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 ZFP64Q9NPA5 681 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 ACKR4Q9NPB9 350 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 CCDC177Q9NQR7 707 aaPredicted RBP7.53□□□□□ -1.2
CD44-232ENST00000531118 PNO1Q9NRX1 252 aaKnown RBP7.53□□□□□ -1.2
CD44-232ENST00000531118 ANO10Q9NW15 660 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 ZNHIT6Q9NWK9 470 aaKnown RBP7.53□□□□□ -1.2
CD44-232ENST00000531118 QPCTLQ9NXS2 382 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 KLHL28Q9NXS3 571 aa7.53□□□□□ -1.2
CD44-232ENST00000531118 NDRG3Q9UGV2 375 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms