RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 NIPAL1Q6NVV3 410 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 LETMD1Q6P1Q0 360 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 TRIM40Q6P9F5 258 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 CEP128Q6ZU80 1094 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 TRMT10CQ7L0Y3 403 aaKnown RBP9.94□□□□□ -0.82
CD44-227ENST00000528086 RPS19BP1Q86WX3 136 aaKnown RBP9.94□□□□□ -0.82
CD44-227ENST00000528086 OR4N5Q8IXE1 308 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 IFT20Q8IY31 132 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 ST6GALNAC3Q8NDV1 305 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 B3GNT7Q8NFL0 401 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 DOK4Q8TEW6 326 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 ZNF483Q8TF39 744 aaPredicted RBP9.94□□□□□ -0.82
CD44-227ENST00000528086 KCNC2Q96PR1 638 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 TBCDQ9BTW9 1192 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 NTMT1Q9BV86 223 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 C1QTNF3Q9BXJ4 246 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 NOL11Q9H8H0 719 aaKnown RBP9.94□□□□□ -0.82
CD44-227ENST00000528086 TRIM45Q9H8W5 580 aaPredicted RBP9.94□□□□□ -0.82
CD44-227ENST00000528086 ANKZF1Q9H8Y5 726 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 LIN28AQ9H9Z2 209 aaKnown RBP9.94□□□□□ -0.82
CD44-227ENST00000528086 LYRM4Q9HD34 91 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 FARSBQ9NSD9 589 aaKnown RBP9.94□□□□□ -0.82
CD44-227ENST00000528086 ASB4Q9Y574 426 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 ZNF407Q9C0G0 2248 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 NCKAP5O14513 1909 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 MAST4O15021 2626 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 A0A1W2PR48 441 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 DYTNA2CJ06 578 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 GABRR3A8MPY1 467 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 ZNHIT1O43257 154 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 UGDHO60701 494 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 PRAMEF2O60811 474 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 CLPSP04118 112 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 RBP1P09455 135 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 CNTFP26441 200 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 KCNK10P57789 538 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 SKP1P63208 163 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 OR1C1Q15619 314 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 TMEM35AQ53FP2 167 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 TCHHL1Q5QJ38 904 aaPredicted RBP9.93□□□□□ -0.82
CD44-227ENST00000528086 OR4C11Q6IEV9 310 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 METTL2BQ6P1Q9 378 aaKnown RBP9.93□□□□□ -0.82
CD44-227ENST00000528086 SIAH3Q8IW03 269 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 ZNF595Q8IYB9 648 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 PRR7Q8TB68 274 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 THAP3Q8WTV1 239 aaPredicted RBP9.93□□□□□ -0.82
CD44-227ENST00000528086 SREK1Q8WXA9 508 aaKnown RBP9.93□□□□□ -0.82
CD44-227ENST00000528086 NR4A3Q92570 626 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 NCLNQ969V3 563 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 CMTM7Q96FZ5 175 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 FAR2Q96K12 515 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 ZNF354BQ96LW1 612 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 TMEM237Q96Q45 408 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 MRPL57Q9BQC6 102 aaKnown RBP9.93□□□□□ -0.82
CD44-227ENST00000528086 MRPL46Q9H2W6 279 aaKnown RBP9.93□□□□□ -0.82
CD44-227ENST00000528086 C12orf65Q9H3J6 166 aaKnown RBP9.93□□□□□ -0.82
CD44-227ENST00000528086 PNO1Q9NRX1 252 aaKnown RBP9.93□□□□□ -0.82
CD44-227ENST00000528086 MAP10Q9P2G4 905 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 VTI1BQ9UEU0 232 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 FBXW2Q9UKT8 454 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 CELSR2Q9HCU4 2923 aa9.93□□□□□ -0.82
CD44-227ENST00000528086 NCOA6Q14686 2063 aaPredicted RBP9.93□□□□□ -0.82
CD44-227ENST00000528086 DNAJC13O75165 2243 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 TRBV11-1A0A0K0K1C0 115 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 ASPDHA6ND91 283 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 GOLGA8RI6L899 631 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 PSMD12O00232 456 aaPredicted RBP9.92□□□□□ -0.82
CD44-227ENST00000528086 PROM1O43490 865 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 KRT38O76015 456 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 CLDN1O95832 211 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 GBAP04062 536 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 EDN3P14138 238 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 CHN1P15882 459 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 TRHRP34981 398 aaPredicted RBP9.92□□□□□ -0.82
CD44-227ENST00000528086 SLAMF1Q13291 335 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 TERF2Q15554 542 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 HIST2H2ACQ16777 129 aaPredicted RBP9.92□□□□□ -0.82
CD44-227ENST00000528086 MEP1AQ16819 746 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 ZNF766Q5HY98 468 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 FHL5Q5TD97 284 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 HIST2H2AA3Q6FI13 130 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 MDGA2Q7Z553 956 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 FGD2Q7Z6J4 655 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 MMP21Q8N119 569 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 LGI4Q8N135 537 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 ZCCHC7Q8N3Z6 543 aaKnown RBP9.92□□□□□ -0.82
CD44-227ENST00000528086 OR4F6Q8NGB9 312 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 ZNF721Q8TF20 911 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 UBE2E3Q969T4 207 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 MTFMTQ96DP5 389 aaKnown RBP9.92□□□□□ -0.82
CD44-227ENST00000528086 FRMD6Q96NE9 622 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 ALOXE3Q9BYJ1 711 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.92□□□□□ -0.82
CD44-227ENST00000528086 DDX31Q9H8H2 851 aaKnown RBP9.92□□□□□ -0.82
CD44-227ENST00000528086 ACTR8Q9H981 624 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 TNFRSF12AQ9NP84 129 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 ADAP2Q9NPF8 381 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 SEMA4BQ9NPR2 832 aaPredicted RBP9.92□□□□□ -0.82
CD44-227ENST00000528086 KLHL1Q9NR64 748 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 TEX10Q9NXF1 929 aaPredicted RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms