RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 TRAP1Q12931 704 aaKnown RBP19.9■□□□□ 0.78
VPS28-208ENST00000527797 C18orf63Q68DL7 685 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 D2HGDHQ8N465 521 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 ARHGEF39Q8N4T4 335 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 GOT1L1Q8NHS2 421 aaPredicted RBP19.9■□□□□ 0.78
VPS28-208ENST00000527797 KLHL6Q8WZ60 621 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 UCN3Q969E3 161 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 DPYSL5Q9BPU6 564 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 KCTD14Q9BQ13 255 aaPredicted RBP19.9■□□□□ 0.78
VPS28-208ENST00000527797 CPPED1Q9BRF8 314 aaPredicted RBP19.9■□□□□ 0.78
VPS28-208ENST00000527797 LYRM4Q9HD34 91 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 KCMF1Q9P0J7 381 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 C5AR2Q9P296 337 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 UTS2RQ9UKP6 389 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 DAPP1Q9UN19 280 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 ACOT8O14734 319 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 CASC3O15234 703 aaKnown RBP19.89■□□□□ 0.77
VPS28-208ENST00000527797 STAMBPO95630 424 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 ABCB1P08183 1280 aaPredicted RBP19.89■□□□□ 0.77
VPS28-208ENST00000527797 NR2F6P10588 404 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 NELFEP18615 380 aaKnown RBP19.89■□□□□ 0.77
VPS28-208ENST00000527797 TLX1P31314 330 aaPredicted RBP19.89■□□□□ 0.77
VPS28-208ENST00000527797 BNIP2Q12982 314 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 FLOT2Q14254 428 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 KCNAB1Q14722 419 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 GARNL3Q5VVW2 1013 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 NIPAL1Q6NVV3 410 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 DBX2Q6ZNG2 339 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 PRSS41Q7RTY9 318 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 IFNEQ86WN2 208 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 PDSS2Q86YH6 399 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 NPLQ9BXD5 320 aaPredicted RBP19.89■□□□□ 0.77
VPS28-208ENST00000527797 ZNF768Q9H5H4 540 aaKnown RBP19.89■□□□□ 0.77
VPS28-208ENST00000527797 SLC35C2Q9NQQ7 365 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 TAS2R9Q9NYW1 312 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 ZNF282Q9UDV7 671 aaPredicted RBP19.89■□□□□ 0.77
VPS28-208ENST00000527797 ERVK-11Q9UQG0 969 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 SPACA6W5XKT8 324 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 CABIN1Q9Y6J0 2220 aa19.89■□□□□ 0.77
VPS28-208ENST00000527797 HYKKA2RU49 373 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 ZNF860A6NHJ4 632 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 GLOD5A6NK44 160 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 EVPLLA8MZ36 301 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 PGRMC2O15173 223 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 PRKRAO75569 313 aaKnown RBP19.88■□□□□ 0.77
VPS28-208ENST00000527797 BCAS2O75934 225 aaPredicted RBP19.88■□□□□ 0.77
VPS28-208ENST00000527797 ATP6V1G2O95670 118 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 PCBP4P57723 403 aaKnown RBP19.88■□□□□ 0.77
VPS28-208ENST00000527797 SKP1P63208 163 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 HBA1P69905 142 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 TNFRSF17Q02223 184 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 GRM7Q14831 915 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 SLC48A1Q6P1K1 146 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 PRR23CQ6ZRP0 262 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 TRIML2Q8N7C3 387 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 TTC29Q8NA56 475 aaPredicted RBP19.88■□□□□ 0.77
VPS28-208ENST00000527797 OR4D9Q8NGE8 314 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 OR5P2Q8WZ92 322 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 JADE3Q92613 823 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 STMN2Q93045 179 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 ZBED6CLQ96FA7 236 aaPredicted RBP19.88■□□□□ 0.77
VPS28-208ENST00000527797 AURKBQ96GD4 344 aaPredicted RBP19.88■□□□□ 0.77
VPS28-208ENST00000527797 SPRTNQ9H040 489 aaPredicted RBP19.88■□□□□ 0.77
VPS28-208ENST00000527797 PCDHAC1Q9H158 963 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 SYNDIG1Q9H7V2 258 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 ACSS1Q9NUB1 689 aaPredicted RBP19.88■□□□□ 0.77
VPS28-208ENST00000527797 GMPR2Q9P2T1 348 aaKnown RBP19.88■□□□□ 0.77
VPS28-208ENST00000527797 PSME2Q9UL46 239 aa19.88■□□□□ 0.77
VPS28-208ENST00000527797 CLIC1O00299 241 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 FLRT2O43155 660 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 LDOC1O95751 146 aaPredicted RBP19.87■□□□□ 0.77
VPS28-208ENST00000527797 ZNF806P0C7X5 589 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 FRKP42685 505 aaPredicted RBP19.87■□□□□ 0.77
VPS28-208ENST00000527797 EMP3P54852 163 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 MANFP55145 182 aaKnown RBP19.87■□□□□ 0.77
VPS28-208ENST00000527797 OLR1P78380 273 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 CLPPQ16740 277 aaPredicted RBP19.87■□□□□ 0.77
VPS28-208ENST00000527797 FAM180BQ6P0A1 224 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 ZNF574Q6ZN55 896 aaPredicted RBP19.87■□□□□ 0.77
VPS28-208ENST00000527797 CNDP2Q96KP4 475 aaKnown RBP19.87■□□□□ 0.77
VPS28-208ENST00000527797 IKZF5Q9H5V7 419 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 PDP2Q9P2J9 529 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 CES1P1Q9UKY3 287 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 ARID1BQ8NFD5 2236 aaPredicted RBP19.87■□□□□ 0.77
VPS28-208ENST00000527797 FITM1A5D6W6 292 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 TMEM150CB9EJG8 249 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 SGK494L7N484 410 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 DNAJB6O75190 326 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 ERAL1O75616 437 aaKnown RBP19.87■□□□□ 0.77
VPS28-208ENST00000527797 ANKRD34CP0C6C1 535 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 PPIBP23284 216 aaKnown RBP19.87■□□□□ 0.77
VPS28-208ENST00000527797 HTR1EP28566 365 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 NTSP30990 170 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 CCNIQ14094 377 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 FAM53BQ14153 422 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 GPR19Q15760 415 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 TMPRSS9Q7Z410 1059 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 HIPK4Q8NE63 616 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 OR9A4Q8NGU2 314 aa19.87■□□□□ 0.77
VPS28-208ENST00000527797 OR10A6Q8NH74 314 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms