RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SLC15A4Q8N697 577 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 NEIL2Q969S2 332 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 CIDECQ96AQ7 238 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-204ENST00000519664 KXD1Q9BQD3 176 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 CALML5Q9NZT1 146 aa11.23□□□□□ -0.61
SYNPO-204ENST00000519664 STOX2Q9P2F5 926 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-204ENST00000519664 B4DGG1 531 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 E2F3O00716 465 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 CAPN5O15484 640 aaPredicted RBP11.22□□□□□ -0.61
SYNPO-204ENST00000519664 CHST10O43529 356 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 DHFRP00374 187 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 ASGR2P07307 311 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 SLC5A2P31639 672 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 CDH11P55287 796 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 MVKQ03426 396 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 TUBB3Q13509 450 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 KLHL22Q53GT1 634 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 XKR4Q5GH76 650 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 DCDC5Q6ZRR9 648 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 TRAM1L1Q8N609 369 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 ZNF248Q8NDW4 579 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 KLF16Q9BXK1 252 aaPredicted RBP11.22□□□□□ -0.61
SYNPO-204ENST00000519664 WDR45Q9Y484 360 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 A0A1B0GTW7 788 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 FAM172BPA6NC97 362 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 OMPP47874 163 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 SLC9A3P48764 834 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 PRMT2P55345 433 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 CD83Q01151 205 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 ODF4Q2M2E3 257 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 RSPO2Q6UXX9 243 aaPredicted RBP11.22□□□□□ -0.61
SYNPO-204ENST00000519664 OR8K5Q8NH50 307 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 ZNF354BQ96LW1 612 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 C5orf34Q96MH7 638 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 KCTD7Q96MP8 289 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 MGLLQ99685 303 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 DPH7Q9BTV6 452 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 TUBB1Q9H4B7 451 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 ZNF334Q9HCZ1 680 aaPredicted RBP11.22□□□□□ -0.61
SYNPO-204ENST00000519664 ING4Q9UNL4 249 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 PCSK2P16519 638 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 CBLP22681 906 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 KCNC4Q03721 635 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 E2F2Q14209 437 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 AAK1Q2M2I8 961 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 WDR45BQ5MNZ6 344 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 PPP2R2DQ66LE6 453 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 Q6ZPB1 254 aaPredicted RBP11.22□□□□□ -0.61
SYNPO-204ENST00000519664 OR5AR1Q8NGP9 310 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 GTF2H4Q92759 462 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 GPR78Q96P69 363 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 SLC38A3Q99624 504 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 NEUROD4Q9HD90 331 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 CLDND1Q9NY35 253 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 SHROOM3Q8TF72 1996 aa11.22□□□□□ -0.61
SYNPO-204ENST00000519664 H3BMQ9 156 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 KMOO15229 486 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 NUDT7P0C024 238 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 CD1EP15812 388 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 EPCAMP16422 314 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 TMBIM6P55061 237 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 COQ5Q5HYK3 327 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 C10orf62Q5T681 223 aaPredicted RBP11.21□□□□□ -0.61
SYNPO-204ENST00000519664 OR51A7Q8NH64 312 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 COG8Q96MW5 612 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 ASPNQ9BXN1 380 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 BEX2Q9BXY8 128 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 OCEL1Q9H607 264 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 BRD7Q9NPI1 651 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 TNFRSF10DQ9UBN6 386 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 NHSL1Q5SYE7 1610 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 NINQ8N4C6 2090 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 MAST2Q6P0Q8 1798 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 A0A1W2PPK0 400 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 FAM47E-STBD1D6RA91 191 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 ACOT8O14734 319 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 RPP14O95059 124 aaKnown RBP11.21□□□□□ -0.61
SYNPO-204ENST00000519664 HOXB2P14652 356 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 PRKACBP22694 351 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 DSC1Q08554 894 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 ANKDD1AQ495B1 522 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 RPS26P11Q5JNZ5 115 aaPredicted RBP11.21□□□□□ -0.61
SYNPO-204ENST00000519664 PRPF38BQ5VTL8 546 aaKnown RBP11.21□□□□□ -0.61
SYNPO-204ENST00000519664 CCSAPQ6IQ19 270 aaPredicted RBP11.21□□□□□ -0.61
SYNPO-204ENST00000519664 DCP2Q8IU60 420 aaKnown RBP11.21□□□□□ -0.61
SYNPO-204ENST00000519664 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.21□□□□□ -0.61
SYNPO-204ENST00000519664 SCML4Q8N228 414 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 OR51G2Q8NGK0 314 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 WFDC5Q8TCV5 224 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 BEX1Q9HBH7 125 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 NEK6Q9HC98 313 aa11.21□□□□□ -0.61
SYNPO-204ENST00000519664 CNOT11Q9UKZ1 510 aaKnown RBP11.21□□□□□ -0.61
SYNPO-204ENST00000519664 DUXAA6NLW8 204 aa11.21□□□□□ -0.62
SYNPO-204ENST00000519664 ZNF26P17031 533 aaPredicted RBP11.21□□□□□ -0.62
SYNPO-204ENST00000519664 SMSP52788 366 aa11.21□□□□□ -0.62
SYNPO-204ENST00000519664 C1orf61Q13536 156 aa11.21□□□□□ -0.62
SYNPO-204ENST00000519664 CAMK1Q14012 370 aa11.21□□□□□ -0.62
SYNPO-204ENST00000519664 ELAVL3Q14576 367 aaKnown RBP11.21□□□□□ -0.62
SYNPO-204ENST00000519664 LCN1P1Q5VSP4 162 aa11.21□□□□□ -0.62
SYNPO-204ENST00000519664 SHFQ7M4L6 423 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms