RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 HDDC3Q8N4P3 179 aa14.14□□□□□ -0.15
NUP54-217ENST00000514987 TBC1D19Q8N5T2 526 aa14.14□□□□□ -0.15
NUP54-217ENST00000514987 DRAXINQ8NBI3 349 aaPredicted RBP14.14□□□□□ -0.15
NUP54-217ENST00000514987 PSMA8Q8TAA3 256 aa14.14□□□□□ -0.15
NUP54-217ENST00000514987 PHF10Q8WUB8 498 aaKnown RBP14.14□□□□□ -0.15
NUP54-217ENST00000514987 APH1BQ8WW43 257 aa14.14□□□□□ -0.15
NUP54-217ENST00000514987 VMP1Q96GC9 406 aa14.14□□□□□ -0.15
NUP54-217ENST00000514987 KCNC2Q96PR1 638 aa14.14□□□□□ -0.15
NUP54-217ENST00000514987 ZNF607Q96SK3 696 aa14.14□□□□□ -0.15
NUP54-217ENST00000514987 MYOCQ99972 504 aa14.14□□□□□ -0.15
NUP54-217ENST00000514987 COPS4Q9BT78 406 aa14.14□□□□□ -0.15
NUP54-217ENST00000514987 LGR4Q9BXB1 951 aa14.14□□□□□ -0.15
NUP54-217ENST00000514987 WDR12Q9GZL7 423 aaKnown RBP14.14□□□□□ -0.15
NUP54-217ENST00000514987 ANKHQ9HCJ1 492 aa14.14□□□□□ -0.15
NUP54-217ENST00000514987 HMG20AQ9NP66 347 aa14.14□□□□□ -0.15
NUP54-217ENST00000514987 ACER3Q9NUN7 267 aa14.14□□□□□ -0.15
NUP54-217ENST00000514987 CUEDC1Q9NWM3 386 aaPredicted RBP14.14□□□□□ -0.15
NUP54-217ENST00000514987 EHD3Q9NZN3 535 aa14.14□□□□□ -0.15
NUP54-217ENST00000514987 COL4A3Q01955 1670 aa14.14□□□□□ -0.15
NUP54-217ENST00000514987 PRAMEF33A0A0G2JMD5 474 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 OR2A25A4D2G3 310 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 H7BY64 318 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 OR1F1O43749 312 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 SH3BP5O60239 455 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 PRAMEF10O60809 474 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 CBFA2T3O75081 653 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 GUCY1B2O75343 617 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 TBX6O95947 436 aaPredicted RBP14.13□□□□□ -0.15
NUP54-217ENST00000514987 MAP2K4P45985 399 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 OR1E2P47887 323 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 MASP1P48740 699 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 ALDH9A1P49189 494 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 ANXA11P50995 505 aaKnown RBP14.13□□□□□ -0.15
NUP54-217ENST00000514987 RAB28P51157 221 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 SMIM11AP58511 58 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 RPS21P63220 83 aaKnown RBP14.13□□□□□ -0.15
NUP54-217ENST00000514987 CYP4F2P78329 520 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 CSNK1G2P78368 415 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 ABATP80404 500 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 PRDX1Q06830 199 aaKnown RBP14.13□□□□□ -0.15
NUP54-217ENST00000514987 SGCGQ13326 291 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 AQP6Q13520 282 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 TBCEQ15813 527 aaPredicted RBP14.13□□□□□ -0.15
NUP54-217ENST00000514987 LAIR1Q6GTX8 287 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 CCDC81Q6ZN84 652 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 ADGRF3Q8IZF5 1079 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 OR2L8Q8NGY9 312 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 PROX1Q92786 737 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 HSPBAP1Q96EW2 488 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 CAMK1GQ96NX5 476 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 PRAP1Q96NZ9 151 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 FAIM2Q9BWQ8 316 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 SORBS1Q9BX66 1292 aaKnown RBP14.13□□□□□ -0.15
NUP54-217ENST00000514987 MVB12BQ9H7P6 319 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 FKBP14Q9NWM8 211 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 KCND3Q9UK17 655 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 HCN2Q9UL51 889 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 PDE4DIPQ5VU43 2346 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 KIAA0100Q14667 2235 aaKnown RBP14.13□□□□□ -0.15
NUP54-217ENST00000514987 SH3D21A4FU49 640 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 CLCA1A8K7I4 914 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 OXSR1O95747 527 aaPredicted RBP14.13□□□□□ -0.15
NUP54-217ENST00000514987 FADS2O95864 444 aaKnown RBP14.13□□□□□ -0.15
NUP54-217ENST00000514987 TNFRSF1BP20333 461 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 CBLP22681 906 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 TNFRSF4P43489 277 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 CASP9P55211 416 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 CDC42P60953 191 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 IRF4Q15306 451 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 SMN1Q16637 294 aaKnown RBP14.13□□□□□ -0.15
NUP54-217ENST00000514987 FBXO43Q4G163 708 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 COLEC12Q5KU26 742 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 ZNF776Q68DI1 518 aaPredicted RBP14.13□□□□□ -0.15
NUP54-217ENST00000514987 OR4C11Q6IEV9 310 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 AHSA2Q719I0 299 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 C6orf120Q7Z4R8 191 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 C7orf61Q8IZ16 206 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 TAGAPQ8N103 731 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 DNAJC22Q8N4W6 341 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 SLC38A5Q8WUX1 472 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 C12orf66Q96MD2 445 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 C1QTNF2Q9BXJ5 285 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 ITPAQ9BY32 194 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 TM7SF3Q9NS93 570 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 IMPAD1Q9NX62 359 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 TMCC3Q9ULS5 477 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 SH3GLB1Q9Y371 365 aa14.13□□□□□ -0.15
NUP54-217ENST00000514987 PRAMEF25A6NGN4 478 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 CLDN25C9JDP6 229 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 FOXD2O60548 495 aaPredicted RBP14.12□□□□□ -0.15
NUP54-217ENST00000514987 SERPINB7O75635 380 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 CDK1P06493 297 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 TFPTP0C1Z6 253 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 PKLRP30613 574 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 GNA13Q14344 377 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 KRT33BQ14525 404 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 ITPRIPL2Q3MIP1 535 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 HORMAD2Q8N7B1 307 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 SMYD1Q8NB12 490 aa14.12□□□□□ -0.15
NUP54-217ENST00000514987 TP53I13Q8NBR0 393 aaPredicted RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms