RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 WDR59Q6PJI9 974 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 Q6ZS92 163 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 TMEM26Q6ZUK4 368 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 B4GALNT4Q76KP1 1039 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 CAMK1DQ8IU85 385 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 TRAM1L1Q8N609 369 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 DNAAF3Q8N9W5 541 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 ACBD4Q8NC06 268 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 OR6K2Q8NGY2 324 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 FAM71BQ8TC56 605 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 SLC37A2Q8TED4 501 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 PIH1D2Q8WWB5 315 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 RMND5BQ96G75 393 aaPredicted RBP3.73□□□□□ -1.81
USP54-217ENST00000498213 CNDP1Q96KN2 507 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 FER1L6-AS2Q96M78 137 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 VPS35Q96QK1 796 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 ERGIC2Q96RQ1 377 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 TREX2Q9BQ50 279 aaPredicted RBP3.73□□□□□ -1.81
USP54-217ENST00000498213 SLX1AQ9BQ83 275 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 CRACR2AQ9BSW2 395 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 TUBB2BQ9BVA1 445 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 NLNQ9BYT8 704 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 FANCEQ9HB96 536 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 MAGEE1Q9HCI5 957 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 LHX9Q9NQ69 397 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 OLAHQ9NV23 265 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 SMOXQ9NWM0 555 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 IL1RAPL1Q9NZN1 696 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 HACD3Q9P035 362 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 RARRES3Q9UL19 164 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 ITM2BQ9Y287 266 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 HEBP2Q9Y5Z4 205 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 AP1M2Q9Y6Q5 423 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 ZANQ9Y493 2812 aa3.73□□□□□ -1.81
USP54-217ENST00000498213 C17orf113A0A1B0GUU1 675 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 DPPA5A6NC42 116 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 TRIM64A6NGJ6 449 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 TRIM64BA6NI03 449 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 LGALS16A8MUM7 142 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 FAM72CH0Y354 149 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 GOLGA8SH3BPF8 625 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 PRYO14603 147 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 PIGNO95427 931 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 ZBTB11O95625 1053 aaPredicted RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 NDST3O95803 873 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 CYC1P08574 325 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 CBSLP0DN79 551 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 PECAM1P16284 738 aaPredicted RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 GM2AP17900 193 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 EGR1P18146 543 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 ITGAXP20702 1163 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 CBSP35520 551 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 HMGCLP35914 325 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 PRKCIP41743 596 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 TNNT3P45378 269 aaPredicted RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 ARCN1P48444 511 aaKnown RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 SPINT3P49223 89 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 KRTAP10-6P60371 365 aaPredicted RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 OTUD4Q01804 1114 aaKnown RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 PLOD1Q02809 727 aaPredicted RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 MAMLD1Q13495 774 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 FHL3Q13643 280 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 PMS2P11Q13670 270 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 CSHL1Q14406 222 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 NAA25Q14CX7 972 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 C3AR1Q16581 482 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 HADHQ16836 314 aaKnown RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 C15orf59Q2T9L4 293 aaPredicted RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 PRTGQ2VWP7 1150 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 ZNF569Q5MCW4 686 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 LDLRAP1Q5SW96 308 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 CCDC183Q5T5S1 534 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 FAM72AQ5TYM5 149 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 FAM90A2PQ658T7 463 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 FAM72DQ6L9T8 149 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 CCDC70Q6NSX1 233 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 TRNP1Q6NT89 227 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 CAVIN1Q6NZI2 390 aaKnown RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 RPUSD3Q6P087 351 aaKnown RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 SCYL2Q6P3W7 929 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 SLC30A9Q6PML9 568 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 CAMKMTQ7Z624 323 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 FAM72BQ86X60 149 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 RAB43Q86YS6 212 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 RASGRP3Q8IV61 690 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 ARHGAP12Q8IWW6 846 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 MCOLN2Q8IZK6 566 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 ATPAF2Q8N5M1 289 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 CCDC185Q8N715 623 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 NEK11Q8NG66 645 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 CCL4L1Q8NHW4 92 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 PATE1Q8WXA2 126 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 CPT1BQ92523 772 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 SYN2Q92777 582 aaPredicted RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 ZNF566Q969W8 418 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 SLC25A28Q96A46 364 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 LRRC45Q96CN5 670 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 ZNF830Q96NB3 372 aaPredicted RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 CSPG4P5Q96PW8 444 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 VAT1Q99536 393 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms