RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 SORDQ00796 357 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 RGS1Q08116 209 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 CCNG2Q16589 344 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 TTC27Q6P3X3 843 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 CAPN12Q6ZSI9 719 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 MAATS1Q7Z4T9 603 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 TMEM52Q8NDY8 209 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 CD200R1Q8TD46 325 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 MAIP1Q8WWC4 291 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 KCNJ9Q92806 393 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 MAGOHBQ96A72 148 aaKnown RBP15.19■□□□□ 0.02
VIM-208ENST00000497849 SGCZQ96LD1 299 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 GPR21Q99679 349 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 AICDAQ9GZX7 198 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 KLHL31Q9H511 634 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 ZNF703Q9H7S9 590 aaPredicted RBP15.19■□□□□ 0.02
VIM-208ENST00000497849 BFARQ9NZS9 450 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 ZFP69BQ9UJL9 534 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 ZNF148Q9UQR1 794 aa15.19■□□□□ 0.02
VIM-208ENST00000497849 NINQ8N4C6 2090 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 CCND1P24385 295 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 TIMP3P35625 211 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 PIGAP37287 484 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 SCTRP47872 440 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 HNRNPFP52597 415 aaKnown RBP15.18■□□□□ 0.02
VIM-208ENST00000497849 ACSF3Q4G176 576 aaPredicted RBP15.18■□□□□ 0.02
VIM-208ENST00000497849 CATSPEREQ5SY80 951 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 KIAA0930Q6ICG6 404 aaPredicted RBP15.18■□□□□ 0.02
VIM-208ENST00000497849 ADGRD1Q6QNK2 874 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 PRSS57Q6UWY2 283 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 HSDL2Q6YN16 418 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 PHC2Q8IXK0 858 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 DOCK7Q96N67 2140 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 OR4K3Q96R72 315 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 PIP5K1AQ99755 562 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 SLC6A15Q9H2J7 730 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 EPB41L4BQ9H329 900 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 EIF2B3Q9NR50 452 aaKnown RBP15.18■□□□□ 0.02
VIM-208ENST00000497849 INTS10Q9NVR2 710 aaKnown RBP15.18■□□□□ 0.02
VIM-208ENST00000497849 JKAMPQ9P055 326 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 SOX13Q9UN79 622 aa15.18■□□□□ 0.02
VIM-208ENST00000497849 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.18■□□□□ 0.02
VIM-208ENST00000497849 SMPD2O60906 423 aa15.17■□□□□ 0.02
VIM-208ENST00000497849 AVILO75366 819 aa15.17■□□□□ 0.02
VIM-208ENST00000497849 CRLF1O75462 422 aa15.17■□□□□ 0.02
VIM-208ENST00000497849 P04436 131 aa15.17■□□□□ 0.02
VIM-208ENST00000497849 RPL22P35268 128 aaKnown RBP15.17■□□□□ 0.02
VIM-208ENST00000497849 AGFG1P52594 562 aaKnown RBP15.17■□□□□ 0.02
VIM-208ENST00000497849 NEPROQ6NW34 567 aa15.17■□□□□ 0.02
VIM-208ENST00000497849 YTHDF3Q7Z739 585 aaKnown RBP15.17■□□□□ 0.02
VIM-208ENST00000497849 ZNF321PQ8N8H1 164 aa15.17■□□□□ 0.02
VIM-208ENST00000497849 ANKRD53Q8N9V6 530 aa15.17■□□□□ 0.02
VIM-208ENST00000497849 NEIL3Q8TAT5 605 aa15.17■□□□□ 0.02
VIM-208ENST00000497849 PYCR2Q96C36 320 aa15.17■□□□□ 0.02
VIM-208ENST00000497849 SNF8Q96H20 258 aa15.17■□□□□ 0.02
VIM-208ENST00000497849 HAUS8Q9BT25 410 aa15.17■□□□□ 0.02
VIM-208ENST00000497849 ADAP2Q9NPF8 381 aa15.17■□□□□ 0.02
VIM-208ENST00000497849 PRTFDC1Q9NRG1 225 aa15.17■□□□□ 0.02
VIM-208ENST00000497849 PAK5Q9P286 719 aa15.17■□□□□ 0.02
VIM-208ENST00000497849 AHRRA9YTQ3 701 aa15.16■□□□□ 0.02
VIM-208ENST00000497849 IL2RAP01589 272 aa15.16■□□□□ 0.02
VIM-208ENST00000497849 AHRP35869 848 aa15.16■□□□□ 0.02
VIM-208ENST00000497849 PAFAH1B1P43034 410 aa15.16■□□□□ 0.02
VIM-208ENST00000497849 HSD17B7P56937 341 aa15.16■□□□□ 0.02
VIM-208ENST00000497849 CTBP1Q13363 440 aa15.16■□□□□ 0.02
VIM-208ENST00000497849 BMPR2Q13873 1038 aa15.16■□□□□ 0.02
VIM-208ENST00000497849 RUNX2Q13950 521 aa15.16■□□□□ 0.02
VIM-208ENST00000497849 PHKG1Q16816 387 aa15.16■□□□□ 0.02
VIM-208ENST00000497849 LACC1Q8IV20 430 aa15.16■□□□□ 0.02
VIM-208ENST00000497849 DENND6AQ8IWF6 608 aa15.16■□□□□ 0.02
VIM-208ENST00000497849 KLHL7Q8IXQ5 586 aa15.16■□□□□ 0.02
VIM-208ENST00000497849 LRRC25Q8N386 305 aaPredicted RBP15.16■□□□□ 0.02
VIM-208ENST00000497849 SMPDL3BQ92485 455 aa15.16■□□□□ 0.02
VIM-208ENST00000497849 NAP1L3Q99457 506 aaPredicted RBP15.16■□□□□ 0.02
VIM-208ENST00000497849 WDR83Q9BRX9 315 aaKnown RBP15.16■□□□□ 0.02
VIM-208ENST00000497849 FRMD8P1Q9BZ68 369 aaPredicted RBP15.16■□□□□ 0.02
VIM-208ENST00000497849 SH2D2AQ9NP31 389 aa15.16■□□□□ 0.02
VIM-208ENST00000497849 ACKR4Q9NPB9 350 aa15.16■□□□□ 0.02
VIM-208ENST00000497849 FBXO6Q9NRD1 293 aaPredicted RBP15.16■□□□□ 0.02
VIM-208ENST00000497849 LRRC3CA6NJW4 275 aa15.15■□□□□ 0.02
VIM-208ENST00000497849 RNF212BA8MTL3 300 aa15.15■□□□□ 0.02
VIM-208ENST00000497849 EIF3FO00303 357 aaPredicted RBP15.15■□□□□ 0.02
VIM-208ENST00000497849 CLDN4O14493 209 aa15.15■□□□□ 0.02
VIM-208ENST00000497849 RNF4P78317 190 aa15.15■□□□□ 0.02
VIM-208ENST00000497849 MRPS25P82663 173 aaKnown RBP15.15■□□□□ 0.02
VIM-208ENST00000497849 SLC13A2Q13183 592 aa15.15■□□□□ 0.02
VIM-208ENST00000497849 TRIP13Q15645 432 aaPredicted RBP15.15■□□□□ 0.02
VIM-208ENST00000497849 ELAVL1Q15717 326 aaKnown RBP15.15■□□□□ 0.02
VIM-208ENST00000497849 CYP1B1Q16678 543 aa15.15■□□□□ 0.02
VIM-208ENST00000497849 ZNF470Q6ECI4 717 aa15.15■□□□□ 0.02
VIM-208ENST00000497849 DRICH1Q6PGQ1 229 aaPredicted RBP15.15■□□□□ 0.02
VIM-208ENST00000497849 OPN5Q6U736 354 aa15.15■□□□□ 0.02
VIM-208ENST00000497849 TMEM132CQ8N3T6 1108 aa15.15■□□□□ 0.02
VIM-208ENST00000497849 PTPMT1Q8WUK0 201 aaPredicted RBP15.15■□□□□ 0.02
VIM-208ENST00000497849 DACH2Q96NX9 599 aa15.15■□□□□ 0.02
VIM-208ENST00000497849 DDX47Q9H0S4 455 aaKnown RBP15.15■□□□□ 0.02
VIM-208ENST00000497849 PARVBQ9HBI1 364 aa15.15■□□□□ 0.02
VIM-208ENST00000497849 PROK2Q9HC23 129 aa15.15■□□□□ 0.02
VIM-208ENST00000497849 URADA6NGE7 173 aa15.14■□□□□ 0.01
VIM-208ENST00000497849 C8GP07360 202 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms