RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	ARMC2	Q8NEN0	867 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	AGAP11	Q8TF27	550 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	PTPMT1	Q8WUK0	201 aa	Predicted RBP	10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	UBTD2	Q8WUN7	234 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	VMP1	Q96GC9	406 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	SERINC2	Q96SA4	455 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	EFCAB11	Q9BUY7	163 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	PHACTR1	Q9C0D0	580 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	CNOT10	Q9H9A5	744 aa	Known RBP	10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	ADAP2	Q9NPF8	381 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	NUDT4	Q9NZJ9	180 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	TXNDC16	Q9P2K2	825 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	MEMO1	Q9Y316	297 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	HRH3	Q9Y5N1	445 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	KLF2	Q9Y5W3	355 aa	Predicted RBP	10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	VPS13C	Q709C8	3753 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	ZFHX3	Q15911	3703 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	AKAP6	Q13023	2319 aa		10.83	□□□□□ -0.68
VTI1A-208	ENST00000494728	SUPT3H	B4E1H0	165 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	HRK	O00198	91 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	FCHO1	O14526	889 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	KERA	O60938	352 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	SUPT3H	O75486	399 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	PRKRA	O75569	313 aa	Known RBP	10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	OR6B1	O95007	311 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	SCEL	O95171	688 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	GSTA2	P09210	222 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	MYBL2	P10244	700 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	ABO	P16442	354 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	ATP5A1	P25705	553 aa	Known RBP	10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	SPR	P35270	261 aa	Predicted RBP	10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	SOX3	P41225	446 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	IRF8	Q02556	426 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	ELAVL1	Q15717	326 aa	Known RBP	10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	TBCC	Q15814	346 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	KRTCAP3	Q53RY4	240 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	GRTP1	Q5TC63	336 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	RPTN	Q6XPR3	784 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	DGAT2L6	Q6ZPD8	337 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	ZNF572	Q7Z3I7	529 aa	Predicted RBP	10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	MAATS1	Q7Z4T9	603 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	DOLPP1	Q86YN1	238 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	GHDC	Q8N2G8	530 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	RPRML	Q8N4K4	120 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	HORMAD2	Q8N7B1	307 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	ACOT4	Q8N9L9	421 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	OR7G3	Q8NG95	312 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	ANKRD9	Q96BM1	317 aa	Predicted RBP	10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	NXNL1	Q96CM4	212 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	MRRF	Q96E11	262 aa	Known RBP	10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	SEC16B	Q96JE7	1060 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	DMRTA2	Q96SC8	542 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	ZNF717	Q9BY31	904 aa	Predicted RBP	10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	TRIM8	Q9BZR9	551 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	PITHD1	Q9GZP4	211 aa	Predicted RBP	10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	OR51B5	Q9H339	312 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	COPS7B	Q9H9Q2	264 aa	Predicted RBP	10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	ZDHHC18	Q9NUE0	388 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728	MED12	Q93074	2177 aa		10.82	□□□□□ -0.68
VTI1A-208	ENST00000494728		G3V3Y1	287 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	WWP2	O00308	870 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	TFEC	O14948	347 aa	Predicted RBP	10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	PEX1	O43933	1283 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	FGF17	O60258	216 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	ETHE1	O95571	254 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	TGFB1	P01137	390 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	PCNA	P12004	261 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	STX2	P32856	288 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	CASP2	P42575	452 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	HK2	P52789	917 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	ETF1	P62495	437 aa	Known RBP	10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	DDX39B	Q13838	428 aa	Known RBP	10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	RAPH1	Q70E73	1250 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	OR4N5	Q8IXE1	308 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	LAS2	Q8IYD9	372 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	TMEM156	Q8N614	296 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	ZFP62	Q8NB50	900 aa	Predicted RBP	10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	FAM98A	Q8NCA5	519 aa	Known RBP	10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	PSD4	Q8NDX1	1056 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	OR52N2	Q8NGI0	321 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	SLC2A12	Q8TD20	617 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	DOK4	Q8TEW6	326 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	TMEM125	Q96AQ2	219 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	KCNC2	Q96PR1	638 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	RASL10B	Q96S79	203 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	CAPS2	Q9BXY5	557 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	ALOXE3	Q9BYJ1	711 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	SNX15	Q9NRS6	342 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	MRPS33	Q9Y291	106 aa	Known RBP	10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	KLF13	Q9Y2Y9	288 aa	Predicted RBP	10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	UTP11	Q9Y3A2	253 aa	Known RBP	10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	LIPG	Q9Y5X9	500 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	KIAA1549	Q9HCM3	1950 aa		10.81	□□□□□ -0.68
VTI1A-208	ENST00000494728	ITPR3	Q14573	2671 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728		A0A088AWK7	358 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728		A0A1B0GTH9	108 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	C17orf105	B2RV13	164 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728		K7EPI3	171 aa		10.8	□□□□□ -0.68
VTI1A-208	ENST00000494728	CLDN4	O14493	209 aa		10.8	□□□□□ -0.68

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