RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 TPSD1Q9BZJ3 242 aa10.32□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FAM92AA1XBS5 289 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 HOXC11O43248 304 aaPredicted RBP10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CD160O95971 181 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 BCKDHAP12694 445 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TYRP1P17643 537 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TNNI3P19429 210 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CR2P20023 1033 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TNFRSF1BP20333 461 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RPL35P42766 123 aaKnown RBP10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NUDT6P53370 316 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SLC16A1P53985 500 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CDC42P60953 191 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SELPLGQ14242 412 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RUNDC3AQ59EK9 446 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 KIF18BQ86Y91 864 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZDHHC21Q8IVQ6 265 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PPCDCQ96CD2 204 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 UQCC2Q9BRT2 126 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GTPBP2Q9BX10 602 aaKnown RBP10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PPIL3Q9H2H8 161 aaKnown RBP10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 EMC3Q9P0I2 261 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MBD2Q9UBB5 411 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 EIF3KQ9UBQ5 218 aaKnown RBP10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 DLGAP4Q9Y2H0 992 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 OAS3Q9Y6K5 1087 aaKnown RBP10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CLCA3PQ9Y6N3 262 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MGAMO43451 1857 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 H3BN98 237 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 OR1E2P47887 323 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SLC7A9P82251 487 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 HYAL2Q12891 473 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 BCL7AQ4VC05 210 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CYBRD1Q53TN4 286 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 AFMIDQ63HM1 303 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MTSS1LQ765P7 747 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZNF438Q7Z4V0 828 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SPATA19Q7Z5L4 167 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GALNT13Q8IUC8 556 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 LYSMD2Q8IV50 215 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RHEBL1Q8TAI7 183 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RPL3LQ92901 407 aaKnown RBP10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TSACCQ96A04 125 aaPredicted RBP10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MAP6Q96JE9 813 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CNDP2Q96KP4 475 aaKnown RBP10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CCM2Q9BSQ5 444 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MEAF6Q9HAF1 191 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RANGRFQ9HD47 186 aaPredicted RBP10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PHPT1Q9NRX4 125 aaPredicted RBP10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GULP1Q9UBP9 304 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 VPS29Q9UBQ0 182 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 A0A1W2PP18 115 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MEIOCA2RUB1 952 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CLCN4P51793 760 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GABARAPL2P60520 117 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 POU6F2P78424 691 aaPredicted RBP10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GANABQ14697 944 aaKnown RBP10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 LCN8Q6JVE9 175 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ARMC6Q6NXE6 501 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ARSKQ6UWY0 536 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 LIPIQ6XZB0 460 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CHMP1BQ7LBR1 199 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NPAS3Q8IXF0 933 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ADGRG5Q8IZF4 528 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FAM83FQ8NEG4 500 aaPredicted RBP10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NACC2Q96BF6 587 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 C1GALT1C1Q96EU7 318 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 LMLNQ96KR4 655 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 Q96MT0 163 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RDH12Q96NR8 316 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MMP28Q9H239 520 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 HEBP1Q9NRV9 189 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CLN6Q9NWW5 311 aa10.31□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 A0A1W2PQU0 124 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CACNB4O00305 520 aaPredicted RBP10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PCDH7O60245 1069 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 KDM4BO94953 1096 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 C9P02748 559 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ADRB3P13945 408 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PKLRP30613 574 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SHMT2P34897 504 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 YBX1P67809 324 aaKnown RBP10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MC1RQ01726 317 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RPA4Q13156 261 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MED27Q6P2C8 311 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ERN2Q76MJ5 926 aaKnown RBP10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RASGEF1AQ8N9B8 481 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ADAMTS19Q8TE59 1207 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RAB8BQ92930 207 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RHBDF1Q96CC6 855 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ITCHQ96J02 903 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 INPP5KQ9BT40 448 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RBCK1Q9BYM8 510 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NKIRAS2Q9NYR9 191 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RHCGQ9UBD6 479 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CXCR6O00574 342 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 POLR1CO15160 346 aaPredicted RBP10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 KLF8O95600 359 aaPredicted RBP10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CLCN7P51798 805 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TAS2R50P59544 299 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms