RNA–Protein interactions for RNA: ENST00000491592.1

RTN4-215, Transcript of reticulon 4, human

TSL 2

Gene RTN4, Length 860 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTN4-215	ENST00000491592	SYT16	Q17RD7	645 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	KNOP1	Q1ED39	458 aa	Known RBP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	HNRNPA1L2	Q32P51	320 aa	Known RBP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	SGO1	Q5FBB7	561 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	C9orf50	Q5SZB4	431 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	NDUFAF5	Q5TEU4	345 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	TBC1D9B	Q66K14	1250 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	ATG9B	Q674R7	924 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	C18orf63	Q68DL7	685 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	CLEC6A	Q6EIG7	209 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	RHBDF2	Q6PJF5	856 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	BRAT1	Q6PJG6	821 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	CCDC137	Q6PK04	289 aa	Known RBP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	KYAT3	Q6YP21	454 aa	Known RBP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	LRRC74B	Q6ZQY2	392 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	PTF1A	Q7RTS3	328 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	SERINC5	Q86VE9	423 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	TDRP	Q86YL5	185 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	CCDC60	Q8IWA6	550 aa	Predicted RBP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	ST13P4	Q8IZP2	240 aa	Predicted RBP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	GPR137C	Q8N3F9	429 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	ANKFN1	Q8N957	763 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	L3MBTL4	Q8NA19	623 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	TMEM185A	Q8NFB2	350 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	EXD1	Q8NHP7	514 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	ANGPTL6	Q8NI99	470 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	LKAAEAR1	Q8TD35	194 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	CD300LF	Q8TDQ1	290 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	SDR42E1	Q8WUS8	393 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	PIGK	Q92643	395 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	STMN2	Q93045	179 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	ARRDC3	Q96B67	414 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	MMAB	Q96EY8	250 aa	Predicted RBP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	TRMT61A	Q96FX7	289 aa	Known RBP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	BSCL2	Q96G97	398 aa	Predicted RBP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	SNF8	Q96H20	258 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	APOLD1	Q96LR9	279 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	CCDC17	Q96LX7	622 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	OR2A14	Q96R47	310 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	OR1F2P	Q96R84	312 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	NDN	Q99608	321 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	ZNF184	Q99676	751 aa	Predicted RBP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	FAM213A	Q9BRX8	229 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	BTBD10	Q9BSF8	475 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	ELOVL1	Q9BW60	279 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	SF3B5	Q9BWJ5	86 aa	Known RBP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	SPATA16	Q9BXB7	569 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	SHCBP1L	Q9BZQ2	653 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	MMP27	Q9H306	513 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	RHBG	Q9H310	441 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	HIPK3	Q9H422	1215 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	NOL11	Q9H8H0	719 aa	Known RBP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	FN3KRP	Q9HA64	309 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	CYP3A43	Q9HB55	503 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	NEK6	Q9HC98	313 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	SEMA5B	Q9P283	1151 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	UXT	Q9UBK9	157 aa	Predicted RBP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	TRMT112	Q9UI30	125 aa	Known RBP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	FBXW11	Q9UKB1	542 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	TRPC5	Q9UL62	973 aa	Predicted RBP	4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	PLAGL1	Q9UM63	463 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	KCNK6	Q9Y257	313 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	PADI2	Q9Y2J8	665 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	ADAMTSL3	P82987	1691 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	CACNA1S	Q13698	1873 aa		4.54	□□□□□ -1.68
RTN4-215	ENST00000491592	UMODL1	Q5DID0	1318 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	SPATA31A1	Q5TZJ5	1347 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592		A0A1B0GVM2	712 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	WIPF3	A6NGB9	483 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	NPIPB13	A6NJU9	1138 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	PCP4L1	A6NKN8	68 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	IQCF5	A8MTL0	148 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	NPIPB4	C9JG80	1138 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	ZNF701	M0R085	212 aa	Predicted RBP	4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	CHAD	O15335	359 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	ARHGEF9	O43307	516 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	HCRTR2	O43614	444 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	MAGEC1	O60732	1142 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	EDF1	O60869	148 aa	Known RBP	4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	CSDE1	O75534	798 aa	Known RBP	4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	PSMG1	O95456	288 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	ALDOA	P04075	364 aa	Known RBP	4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	LYN	P07948	512 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	IQCF3	P0C7M6	154 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	PABPC4L	P0CB38	370 aa	Known RBP	4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	OR8G3P	P0DMU2	310 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	T-ENOL	P0DO92	83 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	CYP2D6	P10635	497 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	SLC2A3	P11169	496 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	CDK4	P11802	303 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	GM2A	P17900	193 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	YWHAQ	P27348	245 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	FMO4	P31512	558 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	SLC6A12	P48065	614 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	RAP1GDS1	P52306	607 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	CLDN8	P56748	225 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	RPL15	P61313	204 aa	Known RBP	4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	TUBA4A	P68366	448 aa		4.53	□□□□□ -1.68
RTN4-215	ENST00000491592	CDR2	Q01850	454 aa		4.53	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 27 ms