RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 PMPCAQ10713 525 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 PDIA2Q13087 525 aaKnown RBP11.49□□□□□ -0.57
CPSF3-204ENST00000489403 ZNF750Q32MQ0 723 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 GXYLT1Q4G148 440 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 ZNF793Q6ZN11 406 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 GK5Q6ZS86 529 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 DMRTC2Q8IXT2 367 aaPredicted RBP11.49□□□□□ -0.57
CPSF3-204ENST00000489403 TCAIMQ8N3R3 496 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 SPATA6LQ8N4H0 392 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 TMEM251Q8N6I4 163 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 MORN4Q8NDC4 146 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 OR5M9Q8NGP3 310 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 OR5M3Q8NGP4 307 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 OR14A16Q8NHC5 309 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 ESAMQ96AP7 390 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 WDR34Q96EX3 536 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 PTCD3Q96EY7 689 aaKnown RBP11.49□□□□□ -0.57
CPSF3-204ENST00000489403 SCYL1Q96KG9 808 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 F2RL3Q96RI0 385 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 CAPS2Q9BXY5 557 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 ALOXE3Q9BYJ1 711 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 EHD1Q9H4M9 534 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 CAB39LQ9H9S4 337 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 PRDM7Q9NQW5 492 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 SMYD2Q9NRG4 433 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 VTI1BQ9UEU0 232 aa11.49□□□□□ -0.57
CPSF3-204ENST00000489403 ANKRD17O75179 2603 aaKnown RBP11.49□□□□□ -0.57
CPSF3-204ENST00000489403 DNAJC13O75165 2243 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 ZFHX3Q15911 3703 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 LDB3O75112 727 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 IGHG3P01860 377 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 HOXD4P09016 255 aaPredicted RBP11.48□□□□□ -0.57
CPSF3-204ENST00000489403 EPORP19235 508 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 CNR1P21554 472 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 MAGEA5P43359 124 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 SLC12A2P55011 1212 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 RNF4P78317 190 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 POU4F1Q01851 419 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 STX4Q12846 297 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 DOC2AQ14183 400 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 RCN2Q14257 317 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 EFTUD2Q15029 972 aaKnown RBP eCLIP11.48□□□□□ -0.57
CPSF3-204ENST00000489403 NDUFAF5Q5TEU4 345 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 RTL4Q6ZR62 310 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 RGS9BPQ6ZS82 235 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 CAPN12Q6ZSI9 719 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 ACAD11Q709F0 780 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 UBE3DQ7Z6J8 389 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 SLC22A16Q86VW1 577 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 FAM109AQ8N4B1 249 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 SNX31Q8N9S9 440 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 GOLM1Q8NBJ4 401 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 OR8K3Q8NH51 312 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 SLC2A12Q8TD20 617 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 RUNDC3BQ96NL0 473 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 SMC6Q96SB8 1091 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 MAPKAP1Q9BPZ7 522 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 FAM173AQ9BQD7 235 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 TRIM31Q9BZY9 425 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 OR8D2Q9GZM6 311 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 CNOT10Q9H9A5 744 aaKnown RBP11.48□□□□□ -0.57
CPSF3-204ENST00000489403 IL1RL2Q9HB29 575 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 LYRM4Q9HD34 91 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 KCNJ16Q9NPI9 418 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 NSMCE4AQ9NXX6 385 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 MTO1Q9Y2Z2 717 aaKnown RBP11.48□□□□□ -0.57
CPSF3-204ENST00000489403 INTS1Q8N201 2190 aaKnown RBP11.48□□□□□ -0.57
CPSF3-204ENST00000489403 CCDC168Q8NDH2 2452 aa11.48□□□□□ -0.57
CPSF3-204ENST00000489403 C2CD3Q4AC94 2353 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 A0A1B0GVC2 190 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 OR14I1A6ND48 311 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 CXorf49A8MYA2 514 aaPredicted RBP11.47□□□□□ -0.57
CPSF3-204ENST00000489403 C17orf105B2RV13 164 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 RTCAO00442 366 aaKnown RBP11.47□□□□□ -0.57
CPSF3-204ENST00000489403 BCKDKO14874 412 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 PHGDHO43175 533 aaKnown RBP11.47□□□□□ -0.57
CPSF3-204ENST00000489403 ZSCAN12O43309 604 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 KLK8O60259 260 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 STK16O75716 305 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 CCDC166P0CW27 439 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 CCL3P10147 92 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 CD1DP15813 335 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 ACVR2AP27037 513 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 KCNC1P48547 511 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 DNASE1L1P49184 302 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 ID2Q02363 134 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 FOXO1Q12778 655 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 SERTAD2Q14140 314 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 OR4D1Q15615 310 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 PDK4Q16654 411 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 CDKL4Q5MAI5 379 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 SULT1C3Q6IMI6 304 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 ZNF585AQ6P3V2 769 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 TRILQ7L0X0 811 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 TMEM200AQ86VY9 491 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 GPSM1Q86YR5 675 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 CREG2Q8IUH2 290 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 ZBED8Q8IZ13 594 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 PDPRQ8NCN5 879 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 ZNF721Q8TF20 911 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms