RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 GBP7Q8N8V2 638 aaPredicted RBP17.51■□□□□ 0.39
PTCD3-217ENST00000488801 CLEC1AQ8NC01 280 aa17.51■□□□□ 0.39
PTCD3-217ENST00000488801 METTL21AQ8WXB1 218 aa17.51■□□□□ 0.39
PTCD3-217ENST00000488801 SLC39A7Q92504 469 aa17.51■□□□□ 0.39
PTCD3-217ENST00000488801 ABHD17AQ96GS6 310 aa17.51■□□□□ 0.39
PTCD3-217ENST00000488801 PKNOX2Q96KN3 472 aa17.51■□□□□ 0.39
PTCD3-217ENST00000488801 SMAD5Q99717 465 aaKnown RBP17.51■□□□□ 0.39
PTCD3-217ENST00000488801 LYARQ9NX58 379 aaKnown RBP17.51■□□□□ 0.39
PTCD3-217ENST00000488801 MRPS33Q9Y291 106 aaKnown RBP17.51■□□□□ 0.39
PTCD3-217ENST00000488801 SHANK1Q9Y566 2161 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 NSG1A0A0A6YYJ2 146 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 MKRN2OSH3BPM6 223 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 C1QL1O75973 258 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 PDGFAP04085 211 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 UROSP10746 265 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 SFTPCP11686 197 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 CHN1P15882 459 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 MAOAP21397 527 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 MYBPC3Q14896 1274 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 NSDHLQ15738 373 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 SGO1Q5FBB7 561 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 KANK2Q63ZY3 851 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 COMMD6Q7Z4G1 85 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 TRIM46Q7Z4K8 759 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 FDCSPQ8NFU4 85 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 CHTF18Q8WVB6 975 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 TUBB6Q9BUF5 446 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 NUDT9Q9BW91 350 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 ZNF160Q9HCG1 818 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 ATP13A2Q9NQ11 1180 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 PRTFDC1Q9NRG1 225 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 SIRT5Q9NXA8 310 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 MS4A12Q9NXJ0 267 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 PHF11Q9UIL8 331 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 SLC12A4Q9UP95 1085 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 ATG4BQ9Y4P1 393 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 CCL27Q9Y4X3 112 aa17.5■□□□□ 0.39
PTCD3-217ENST00000488801 IGHV3-20A0A0C4DH32 117 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 TMEM120BA0PK00 339 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 SYNDIG1LA6NDD5 238 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 K7EM74 188 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 PROM1O43490 865 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 FGF4P08620 206 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 CCL11P51671 97 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 WDR4P57081 412 aaKnown RBP17.49■□□□□ 0.39
PTCD3-217ENST00000488801 MAGOHP61326 146 aaKnown RBP17.49■□□□□ 0.39
PTCD3-217ENST00000488801 SLAMF1Q13291 335 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 TERF2Q15554 542 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 SFT2D3Q587I9 215 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 ARL13AQ5H913 290 aaPredicted RBP17.49■□□□□ 0.39
PTCD3-217ENST00000488801 HDXQ7Z353 690 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 GPR180Q86V85 440 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 C9orf43Q8TAL5 461 aaPredicted RBP17.49■□□□□ 0.39
PTCD3-217ENST00000488801 ARL8AQ96BM9 186 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 PTCHD1Q96NR3 888 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 SLC25A18Q9H1K4 315 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 ZNF552Q9H707 407 aaPredicted RBP17.49■□□□□ 0.39
PTCD3-217ENST00000488801 VPS29Q9UBQ0 182 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 FBXW2Q9UKT8 454 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 PPIEQ9UNP9 301 aaKnown RBP17.49■□□□□ 0.39
PTCD3-217ENST00000488801 TP53TG5Q9Y2B4 290 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 PCDHGB7Q9Y5F8 929 aa17.49■□□□□ 0.39
PTCD3-217ENST00000488801 GOLGA6L10A6NI86 522 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 AZIN1O14977 448 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 CTNSO60931 367 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 SEC24DO94855 1032 aaPredicted RBP17.48■□□□□ 0.39
PTCD3-217ENST00000488801 FAM58BPP0C7Q3 252 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 PRR35P0CG20 571 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 PRPH2P23942 346 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 RAE1P78406 368 aaKnown RBP17.48■□□□□ 0.39
PTCD3-217ENST00000488801 UGT3A2Q3SY77 523 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 PLAG1Q6DJT9 500 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 CLEC6AQ6EIG7 209 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 GALNT18Q6P9A2 607 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 RIPOR1Q6ZS17 1223 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 PAGE2Q7Z2X7 111 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 C1orf52Q8N6N3 182 aaKnown RBP17.48■□□□□ 0.39
PTCD3-217ENST00000488801 AMER2Q8N7J2 671 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 PSMF1Q92530 271 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 ANKRD9Q96BM1 317 aaPredicted RBP17.48■□□□□ 0.39
PTCD3-217ENST00000488801 SLC25A23Q9BV35 468 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 SHCBP1LQ9BZQ2 653 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 NMRK1Q9NWW6 199 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 TEX10Q9NXF1 929 aaPredicted RBP17.48■□□□□ 0.39
PTCD3-217ENST00000488801 GPR83Q9NYM4 423 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 AHSPQ9NZD4 102 aa17.48■□□□□ 0.39
PTCD3-217ENST00000488801 ZNF462Q96JM2 2506 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 A0A1W2PR48 441 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 SAGE2PA6NJ88 616 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 CLDN4O14493 209 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 SASH3O75995 380 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 AIFM1O95831 613 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 SERPINE1P05121 402 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 SERPINA7P05543 415 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 CELA2AP08217 269 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 CPN2P22792 545 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 SERPINB3P29508 390 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 SOX11P35716 441 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 HMGCS1Q01581 520 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 LACTB2Q53H82 288 aaPredicted RBP17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms