RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 LILRA2Q8N149 483 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 OR8J3Q8NGG0 315 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 OLIG1Q8TAK6 271 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 GEMIN6Q8WXD5 167 aaKnown RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 PMEPA1Q969W9 287 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 KCNC2Q96PR1 638 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 F2RL3Q96RI0 385 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 ATOH8Q96SQ7 321 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 SLITRK2Q9H156 845 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 MED28Q9H204 178 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 ABCB9Q9NP78 766 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 HRASLS2Q9NWW9 162 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 WBP1LQ9NX94 342 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 IGLV3-10A0A075B6K4 115 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 A0A096LPI6 279 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 IRGMA1A4Y4 181 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 ABLIM3O94929 683 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 IL3P08700 152 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 HMGA1P17096 107 aaKnown RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 CD72P21854 359 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 HNRNPKP61978 463 aaKnown RBP eCLIP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 HNRNPA1L2Q32P51 320 aaKnown RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 ARHGAP40Q5TG30 622 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 GJD3Q8N144 294 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 RIT1Q92963 219 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 LGALS12Q96DT0 336 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 SH3YL1Q96HL8 342 aaPredicted RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 SLC30A2Q9BRI3 323 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 NEUROD4Q9HD90 331 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 APOBEC3BQ9UH17 382 aaKnown RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 XPNPEP2O43895 674 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 PSIP1O75475 530 aaKnown RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 SNX4O95219 450 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 PTTG1O95997 202 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 RPS17P08708 135 aaKnown RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 FPR1P21462 350 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 CTGFP29279 349 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 CD40LGP29965 261 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 CXCL12P48061 93 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 ABATP80404 500 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 LGALS3BPQ08380 585 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 C1orf61Q13536 156 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 IL18Q14116 193 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 CYBRD1Q53TN4 286 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 C11orf88Q6PI97 169 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 CCBE1Q6UXH8 406 aaPredicted RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 SLC30A8Q8IWU4 369 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 TMEM102Q8N9M5 508 aaPredicted RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 ZDHHC12Q96GR4 267 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 C3orf30Q96M34 536 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 SDR39U1Q9NRG7 319 aaPredicted RBP10.58□□□□□ -0.72
HDAC6-228ENST00000486227 SACM1LQ9NTJ5 587 aa10.58□□□□□ -0.72
HDAC6-228ENST00000486227 NME4O00746 187 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 CPNE3O75131 537 aaKnown RBP10.57□□□□□ -0.72
HDAC6-228ENST00000486227 CHRM5P08912 532 aaPredicted RBP10.57□□□□□ -0.72
HDAC6-228ENST00000486227 CLDN8P56748 225 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 NRG3P56975 720 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 TRIM71Q2Q1W2 868 aaKnown RBP10.57□□□□□ -0.72
HDAC6-228ENST00000486227 FAM214AQ32MH5 1076 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 LIPIQ6XZB0 460 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 SLC36A4Q6YBV0 504 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 TBC1D15Q8TC07 691 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 IL4I1Q96RQ9 567 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 TMEM246Q9BRR3 403 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 CPEB1Q9BZB8 566 aaKnown RBP10.57□□□□□ -0.72
HDAC6-228ENST00000486227 ANKRA2Q9H9E1 313 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 STOX2Q9P2F5 926 aaPredicted RBP10.57□□□□□ -0.72
HDAC6-228ENST00000486227 ZNF860A6NHJ4 632 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 E7EQ34 232 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 EIF3FO00303 357 aaPredicted RBP10.57□□□□□ -0.72
HDAC6-228ENST00000486227 GNB5O14775 395 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 CCR7P32248 378 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 ID2Q02363 134 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 ZNF630Q2M218 657 aaPredicted RBP10.57□□□□□ -0.72
HDAC6-228ENST00000486227 IER5LQ5T953 404 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 ATG9BQ674R7 924 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 SMARCD3Q6STE5 483 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 TDHQ8IZJ6 230 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 SLC7A5P1Q8MH63 180 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 TAPBPLQ9BX59 468 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 SNTG1Q9NSN8 517 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 THUMPD1Q9NXG2 353 aaKnown RBP10.57□□□□□ -0.72
HDAC6-228ENST00000486227 TMEM181Q9P2C4 612 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 HEMK1Q9Y5R4 338 aaPredicted RBP10.57□□□□□ -0.72
HDAC6-228ENST00000486227 NUAK1O60285 661 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 C9P02748 559 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 HSD3B1P14060 373 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 TIMP2P16035 220 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 ZNF26P17031 533 aaPredicted RBP10.57□□□□□ -0.72
HDAC6-228ENST00000486227 HSD3B2P26439 372 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 OR1E2P47887 323 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 PIGFQ07326 219 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 SLC36A3Q495N2 470 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 CYP27C1Q4G0S4 372 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 CRB2Q5IJ48 1285 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 PTCRAQ6ISU1 281 aaPredicted RBP10.57□□□□□ -0.72
HDAC6-228ENST00000486227 KIAA1161Q6NSJ0 714 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 PARS2Q7L3T8 475 aaKnown RBP10.57□□□□□ -0.72
HDAC6-228ENST00000486227 ANKRD33Q7Z3H0 272 aa10.57□□□□□ -0.72
HDAC6-228ENST00000486227 CHCHD4Q8N4Q1 142 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms