RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TRGV8A0A0C4DH27 118 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 CLDN4O14493 209 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 ZNF354AO60765 605 aaPredicted RBP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 SLC19A2O60779 497 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 LDB3O75112 727 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 ITGA10O75578 1167 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 SIX3O95343 332 aaPredicted RBP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 PCNAP12004 261 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 EPB42P16452 691 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 ZNF10P21506 573 aaPredicted RBP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 CYB561P49447 251 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 CLCN2P51788 898 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 NR0B1P51843 470 aaKnown RBP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 PER3P56645 1201 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 ID2Q02363 134 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 ACAP2Q15057 778 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 ELAVL1Q15717 326 aaKnown RBP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 UAP1Q16222 522 aaPredicted RBP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 C3AR1Q16581 482 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 TMEM35AQ53FP2 167 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 DEPDC1Q5TB30 811 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 KHDRBS2Q5VWX1 349 aaKnown RBP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 Q6ZPB1 254 aaPredicted RBP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 SREK1Q8WXA9 508 aaKnown RBP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 DMRT3Q9NQL9 472 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 VTI1BQ9UEU0 232 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 TINAGQ9UJW2 476 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 PCNX1Q96RV3 2341 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 TACC2O95359 2948 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 NPIPA5E9PKD4 350 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 PLPP1O14494 284 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 PRKRAO75569 313 aaKnown RBP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 ETHE1O95571 254 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 ACSL3O95573 720 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 SERPINB8P50452 374 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 ALDH18A1P54886 795 aaKnown RBP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 IGLV3-21P80748 117 aaPredicted RBP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 ADORA2A-AS1P86434 159 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 HSF1Q00613 529 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 ALDH6A1Q02252 535 aaKnown RBP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 PCBP2Q15366 365 aaKnown RBP eCLIP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 HIST2H2ACQ16777 129 aaPredicted RBP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 FAM83EQ2M2I3 478 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 FAM219BQ5XKK7 198 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 HIST2H2AA3Q6FI13 130 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 DGAT2L6Q6ZPD8 337 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 GOLGA7Q7Z5G4 137 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 CCDC91Q7Z6B0 441 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 HORMAD2Q8N7B1 307 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 ALOXE3Q9BYJ1 711 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 COPS7BQ9H9Q2 264 aaPredicted RBP13.12□□□□□ -0.31
UPF3A-204ENST00000475218 DEPPQ9NTK1 212 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 SH3BGRL2Q9UJC5 107 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 FBXW2Q9UKT8 454 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 NPIPA1Q9UND3 350 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 TSC22D4Q9Y3Q8 395 aa13.12□□□□□ -0.31
UPF3A-204ENST00000475218 GTF3C1Q12789 2109 aa13.11□□□□□ -0.31
UPF3A-204ENST00000475218 WASHC1A8K0Z3 465 aa13.11□□□□□ -0.31
UPF3A-204ENST00000475218 SYCE1LA8MT33 242 aa13.11□□□□□ -0.31
UPF3A-204ENST00000475218 CCL21O00585 134 aa13.11□□□□□ -0.31
UPF3A-204ENST00000475218 OR7A17O14581 309 aa13.11□□□□□ -0.31
UPF3A-204ENST00000475218 FGF17O60258 216 aa13.11□□□□□ -0.31
UPF3A-204ENST00000475218 GRNP28799 593 aaKnown RBP13.11□□□□□ -0.31
UPF3A-204ENST00000475218 TYK2P29597 1187 aa13.11□□□□□ -0.31
UPF3A-204ENST00000475218 HPDP32754 393 aaPredicted RBP13.11□□□□□ -0.31
UPF3A-204ENST00000475218 RFC3P40938 356 aa13.11□□□□□ -0.31
UPF3A-204ENST00000475218 CDSNQ15517 529 aa13.11□□□□□ -0.31
UPF3A-204ENST00000475218 NCCRP1Q6ZVX7 275 aaPredicted RBP13.11□□□□□ -0.31
UPF3A-204ENST00000475218 SULF2Q8IWU5 870 aa13.11□□□□□ -0.31
UPF3A-204ENST00000475218 UBE2E3Q969T4 207 aa13.11□□□□□ -0.31
UPF3A-204ENST00000475218 CMTM7Q96FZ5 175 aa13.11□□□□□ -0.31
UPF3A-204ENST00000475218 MTERF1Q99551 399 aaKnown RBP13.11□□□□□ -0.31
UPF3A-204ENST00000475218 MRPS33Q9Y291 106 aaKnown RBP13.11□□□□□ -0.31
UPF3A-204ENST00000475218 RNF11Q9Y3C5 154 aa13.11□□□□□ -0.31
UPF3A-204ENST00000475218 EML6Q6ZMW3 1958 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 CCDC189A1A4V9 331 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 PINLYPA6NC86 204 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 H0YIV9 168 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 FCHO1O14526 889 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 ASNA1O43681 348 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 EEDO75530 441 aaKnown RBP13.1□□□□□ -0.31
UPF3A-204ENST00000475218 OR2J2O76002 312 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 ZFAND5O76080 213 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 SBK3P0C264 359 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 GFAPP14136 432 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 SERPINB1P30740 379 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 PTGER1P34995 402 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 PIK3CBP42338 1070 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 HNRNPH2P55795 449 aaKnown RBP13.1□□□□□ -0.31
UPF3A-204ENST00000475218 RPS13P62277 151 aaKnown RBP13.1□□□□□ -0.31
UPF3A-204ENST00000475218 TGM3Q08188 693 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 DDX39BQ13838 428 aaKnown RBP13.1□□□□□ -0.31
UPF3A-204ENST00000475218 KRTCAP3Q53RY4 240 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 LIPJQ5W064 366 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 C18orf63Q68DL7 685 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 OR4C11Q6IEV9 310 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 MRM1Q6IN84 353 aaKnown RBP13.1□□□□□ -0.31
UPF3A-204ENST00000475218 OR4N5Q8IXE1 308 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 TMEM151AQ8N4L1 468 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 L3MBTL4Q8NA19 623 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms