RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 CDV3Q9UKY7 258 aaKnown RBP11.13□□□□□ -0.63
NPHP4-204ENST00000460696 COLEC10Q9Y6Z7 277 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 BOLA2-SMG1P6H3BVE0 249 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 MPZL2O60487 215 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 CFIP05156 583 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 CKMT1AP12532 417 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 LAMP2P13473 410 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 CSNK2A2P19784 350 aaPredicted RBP11.13□□□□□ -0.63
NPHP4-204ENST00000460696 IMPA1P29218 277 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 YBX1P67809 324 aaKnown RBP11.13□□□□□ -0.63
NPHP4-204ENST00000460696 KCNC4Q03721 635 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 C5orf22Q49AR2 442 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 PYDC2Q56P42 97 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 UHRF1Q96T88 793 aaPredicted RBP11.13□□□□□ -0.63
NPHP4-204ENST00000460696 SRMSQ9H3Y6 488 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 EHD1Q9H4M9 534 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 OCEL1Q9H607 264 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 GPR83Q9NYM4 423 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 MRPS17Q9Y2R5 130 aaKnown RBP11.13□□□□□ -0.63
NPHP4-204ENST00000460696 URADA6NGE7 173 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 LRRC72A6NJI9 287 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 KMOO15229 486 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 ARHGEF15O94989 841 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 SLC35G6P0C7Q6 338 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 SAGP10523 405 aaPredicted RBP11.13□□□□□ -0.63
NPHP4-204ENST00000460696 CPN2P22792 545 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 SLC6A11P48066 632 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 GRSF1Q12849 480 aaKnown RBP eCLIP11.13□□□□□ -0.63
NPHP4-204ENST00000460696 FADDQ13158 208 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 ZNF404Q494X3 552 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 FAM131AQ6UXB0 335 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 FAM20CQ8IXL6 584 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 TP53INP1Q96A56 240 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 MRPL38Q96DV4 380 aaKnown RBP11.13□□□□□ -0.63
NPHP4-204ENST00000460696 MACROD1Q9BQ69 325 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 NEUROD4Q9HD90 331 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 PAK1IP1Q9NWT1 392 aaPredicted RBP11.13□□□□□ -0.63
NPHP4-204ENST00000460696 KLHL42Q9P2K6 505 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 PPT2Q9UMR5 302 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 CD160O95971 181 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 IFNA16P05015 189 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 PIK3CBP42338 1070 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 EMX1Q04741 257 aaPredicted RBP11.12□□□□□ -0.63
NPHP4-204ENST00000460696 RPS26P11Q5JNZ5 115 aaPredicted RBP11.12□□□□□ -0.63
NPHP4-204ENST00000460696 ADNP2Q6IQ32 1131 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 CDC73Q6P1J9 531 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 LAPTM4BQ86VI4 370 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 KLHDC8BQ8IXV7 354 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 SGCDQ92629 289 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 DNASE1L2Q92874 299 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 UBE2FQ969M7 185 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 WDR90Q96KV7 1748 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 TPSD1Q9BZJ3 242 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 SPIN1Q9Y657 262 aaPredicted RBP11.12□□□□□ -0.63
NPHP4-204ENST00000460696 UGDHO60701 494 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 ALOX5P09917 674 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 MPIP34949 423 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 TPTEP56180 551 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 PFN3P60673 137 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 SELENOWP63302 87 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 BTN3A2P78410 334 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 RBBP4Q09028 425 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 USP43Q70EL4 1123 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 KCT2Q8NC54 265 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 OR52N2Q8NGI0 321 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 ZNF675Q8TD23 568 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 DIRAS2Q96HU8 199 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 BHLHE41Q9C0J9 482 aaPredicted RBP11.12□□□□□ -0.63
NPHP4-204ENST00000460696 TBC1D17Q9HA65 648 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 SPATA6Q9NWH7 488 aaPredicted RBP11.12□□□□□ -0.63
NPHP4-204ENST00000460696 GTF2A1LQ9UNN4 478 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 MID1O15344 667 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 UQCRC2P22695 453 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 C21orf33P30042 268 aaPredicted RBP11.12□□□□□ -0.63
NPHP4-204ENST00000460696 OPRL1P41146 370 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 DHPSP49366 369 aaPredicted RBP11.12□□□□□ -0.63
NPHP4-204ENST00000460696 SLC5A12Q1EHB4 618 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 TPRG1LQ5T0D9 272 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 FAM92BQ6ZTR7 304 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 IQCHQ86VS3 1027 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 SLC22A16Q86VW1 577 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 L3MBTL4Q8NA19 623 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 DTD2Q96FN9 168 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 PIP5K1AQ99755 562 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 FZD3Q9NPG1 666 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 OR10H1Q9Y4A9 318 aa11.12□□□□□ -0.63
NPHP4-204ENST00000460696 SPTAN1Q13813 2472 aaKnown RBP11.12□□□□□ -0.63
NPHP4-204ENST00000460696 KAT7O95251 611 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 KCNK5O95279 499 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 C1orf105O95561 183 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 HSD17B2P37059 387 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 STXBP1P61764 594 aaKnown RBP11.11□□□□□ -0.63
NPHP4-204ENST00000460696 VEZF1Q14119 521 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 GPR68Q15743 365 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 ANKDD1AQ495B1 522 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 CRTC2Q53ET0 693 aaPredicted RBP11.11□□□□□ -0.63
NPHP4-204ENST00000460696 CCDC92Q53HC0 331 aaPredicted RBP11.11□□□□□ -0.63
NPHP4-204ENST00000460696 C10orf62Q5T681 223 aaPredicted RBP11.11□□□□□ -0.63
NPHP4-204ENST00000460696 TMPRSS11AQ6ZMR5 421 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 MSANTD1Q6ZTZ1 278 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms