RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 CHAC2Q8WUX2 184 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 ZCCHC14Q8WYQ9 949 aaKnown RBP9.82□□□□□ -0.84
USP39-210ENST00000459775 HDAC2Q92769 488 aaKnown RBP9.82□□□□□ -0.84
USP39-210ENST00000459775 GATA6Q92908 595 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 SLC22A18Q96BI1 424 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 EGLN2Q96KS0 407 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 CHCHD6Q9BRQ6 235 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 WASF3Q9UPY6 502 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 COPG1Q9Y678 874 aaKnown RBP9.82□□□□□ -0.84
USP39-210ENST00000459775 ANKDD1BA6NHY2 528 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 L7N2F9 121 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 NDUFS4O43181 175 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 RSL1D1O76021 490 aaKnown RBP9.82□□□□□ -0.84
USP39-210ENST00000459775 PRR35P0CG20 571 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 CKMT1AP12532 417 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 ABATP80404 500 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 HYAL2Q12891 473 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 FOXC1Q12948 553 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 PTGR1Q14914 329 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 KIAA0040Q15053 153 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 NDUFA5Q16718 116 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 HIST2H2ACQ16777 129 aaPredicted RBP9.82□□□□□ -0.84
USP39-210ENST00000459775 IL23RQ5VWK5 629 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 HIST2H2AA3Q6FI13 130 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 PAOXQ6QHF9 649 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 BEND4Q6ZU67 534 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 CLNKQ7Z7G1 428 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 C1orf52Q8N6N3 182 aaKnown RBP9.82□□□□□ -0.84
USP39-210ENST00000459775 POU5F2Q8N7G0 328 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 ZNF454Q8N9F8 522 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 BAHD1Q8TBE0 780 aaPredicted RBP9.82□□□□□ -0.84
USP39-210ENST00000459775 ACTRT2Q8TDY3 377 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 CREB3L4Q8TEY5 395 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 GFM2Q969S9 779 aaKnown RBP9.82□□□□□ -0.84
USP39-210ENST00000459775 LRRC37BQ96QE4 947 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 OR2A5Q96R48 311 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 SEMA6CQ9H3T2 930 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 LRTM1Q9HBL6 345 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 PILRAQ9UKJ1 303 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 RALYQ9UKM9 306 aaKnown RBP9.82□□□□□ -0.84
USP39-210ENST00000459775 SNX7Q9UNH6 387 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 MRPS2Q9Y399 296 aaKnown RBP9.82□□□□□ -0.84
USP39-210ENST00000459775 ENTPD2Q9Y5L3 495 aa9.82□□□□□ -0.84
USP39-210ENST00000459775 TRBC2A0A5B9 178 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 SLC28A1O00337 649 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 UBDO15205 165 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 TNFSF14O43557 240 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 DNAJB6O75190 326 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 KLHL18O94889 574 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 UBOX5O94941 541 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 CBX6O95503 412 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 G6PDP11413 515 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 LBPP18428 481 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 GSK3AP49840 483 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 PLA2G16P53816 162 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 RAB8AP61006 207 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 CSNK2BP67870 215 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 RAE1P78406 368 aaKnown RBP9.81□□□□□ -0.84
USP39-210ENST00000459775 TBL3Q12788 808 aaKnown RBP9.81□□□□□ -0.84
USP39-210ENST00000459775 SLC5A12Q1EHB4 618 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 ATP6AP1LQ52LC2 224 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 TCTE1Q5JU00 501 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 PRAMEF17Q5VTA0 474 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 CACHD1Q5VU97 1274 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 TRPM8Q7Z2W7 1104 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 UBE3DQ7Z6J8 389 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 MMP21Q8N119 569 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 ANKS4BQ8N8V4 417 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 MNTQ99583 582 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 CIB1Q99828 191 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 ARL8BQ9NVJ2 186 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 VPS29Q9UBQ0 182 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 ZFP69BQ9UJL9 534 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 RALGAPA1Q6GYQ0 2036 aa9.81□□□□□ -0.84
USP39-210ENST00000459775 ASCC3Q8N3C0 2202 aaKnown RBP9.81□□□□□ -0.84
USP39-210ENST00000459775 ZFHX4Q86UP3 3567 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 LOC100653049A0A140TA62 436 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 CCT8L1PA6NM43 557 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 ANKRD65E5RJM6 399 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 H0YGG7 62 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 TAF4O00268 1085 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 RGS14O43566 566 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 DUX1O43812 170 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 EEDO75530 441 aaKnown RBP9.8□□□□□ -0.84
USP39-210ENST00000459775 KRT34O76011 436 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 LRATO95237 230 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 CCNDBP1O95273 360 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 LDOC1O95751 146 aaPredicted RBP9.8□□□□□ -0.84
USP39-210ENST00000459775 S100A9P06702 114 aaKnown RBP9.8□□□□□ -0.84
USP39-210ENST00000459775 NAGAP17050 411 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 GRK6P43250 576 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 GPR3P46089 330 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 CPA2P48052 419 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 VSX2P58304 361 aaPredicted RBP9.8□□□□□ -0.84
USP39-210ENST00000459775 ARF3P61204 181 aaPredicted RBP9.8□□□□□ -0.84
USP39-210ENST00000459775 UFM1P61960 85 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 NR1D2Q14995 579 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 CYP27C1Q4G0S4 372 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 KLHL35Q6PF15 583 aa9.8□□□□□ -0.84
USP39-210ENST00000459775 CHSY3Q70JA7 882 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms