RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 RNF32Q9H0A6 362 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 ILKAPQ9H0C8 392 aaPredicted RBP16.25■□□□□ 0.19
USP39-208ENST00000455732 ROPN1Q9HAT0 212 aaPredicted RBP16.25■□□□□ 0.19
USP39-208ENST00000455732 PRM3Q9NNZ6 103 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 PRTFDC1Q9NRG1 225 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 MKS1Q9NXB0 559 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 PTGFRNQ9P2B2 879 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 TRPS1Q9UHF7 1281 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 LGALS13Q9UHV8 139 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 VPS4AQ9UN37 437 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 STK38LQ9Y2H1 464 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 PCDHGA10Q9Y5H3 936 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 SPACA6W5XKT8 324 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 SPTAN1Q13813 2472 aaKnown RBP16.25■□□□□ 0.19
USP39-208ENST00000455732 POLEQ07864 2286 aa16.25■□□□□ 0.19
USP39-208ENST00000455732 A0A1B0GTL3 188 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 SAGE2PA6NJ88 616 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 FOXO6A8MYZ6 492 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 SAP18O00422 153 aaKnown RBP16.24■□□□□ 0.19
USP39-208ENST00000455732 PPP6CO00743 305 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 SH3BGRLO75368 114 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 MLYCDO95822 493 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 PROCP04070 461 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 TUBBP07437 444 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 NEK2P51955 445 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 IFT88Q13099 833 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 ZYG11AQ6WRX3 759 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 LINC00696Q6ZRV3 163 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 CISD2Q8N5K1 135 aaKnown RBP16.24■□□□□ 0.19
USP39-208ENST00000455732 SIRT6Q8N6T7 355 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 RDH11Q8TC12 318 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 TRPC4APQ8TEL6 797 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 SERPINI1Q99574 410 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 BARD1Q99728 777 aaKnown RBP16.24■□□□□ 0.19
USP39-208ENST00000455732 MAPKAP1Q9BPZ7 522 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 ASF1BQ9NVP2 202 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 MS4A12Q9NXJ0 267 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 ZNF225Q9UK10 706 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 GRID1Q9ULK0 1009 aa16.24■□□□□ 0.19
USP39-208ENST00000455732 SPTBN1Q01082 2364 aaKnown RBP16.24■□□□□ 0.19
USP39-208ENST00000455732 TCP11X1B4DZS4 312 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 G3V2L1 256 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 TGFBR3LH3BV60 316 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 COPEO14579 308 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 PLIN3O60664 434 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 CTNSO60931 367 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 SUPT7LO94864 414 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 ETHE1O95571 254 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 MYL2P10916 166 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 KRT4P19013 534 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 GNLYP22749 145 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 BSGP35613 385 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 NAA20P61599 178 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 IFFO1Q0D2I5 559 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 LCP2Q13094 533 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 UBAP2LQ14157 1087 aaKnown RBP16.23■□□□□ 0.19
USP39-208ENST00000455732 MRM1Q6IN84 353 aaKnown RBP16.23■□□□□ 0.19
USP39-208ENST00000455732 C7orf57Q8NEG2 295 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 DNAJB14Q8TBM8 379 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 ELP5Q8TE02 316 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 TMEM109Q9BVC6 243 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 SORBS1Q9BX66 1292 aaKnown RBP16.23■□□□□ 0.19
USP39-208ENST00000455732 SLC29A3Q9BZD2 475 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 ELOVL6Q9H5J4 265 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 DDX31Q9H8H2 851 aaKnown RBP16.23■□□□□ 0.19
USP39-208ENST00000455732 TEKT2Q9UIF3 430 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 PHF11Q9UIL8 331 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 PPIEQ9UNP9 301 aaKnown RBP16.23■□□□□ 0.19
USP39-208ENST00000455732 NTNG1Q9Y2I2 539 aa16.23■□□□□ 0.19
USP39-208ENST00000455732 UTP20O75691 2785 aaKnown RBP16.23■□□□□ 0.19
USP39-208ENST00000455732 A0A0A6YYD5 115 aa16.22■□□□□ 0.19
USP39-208ENST00000455732 TSPAN8P19075 237 aa16.22■□□□□ 0.19
USP39-208ENST00000455732 SLC13A2Q13183 592 aa16.22■□□□□ 0.19
USP39-208ENST00000455732 SLAMF1Q13291 335 aa16.22■□□□□ 0.19
USP39-208ENST00000455732 ABHD17BQ5VST6 288 aa16.22■□□□□ 0.19
USP39-208ENST00000455732 B3GNTL1Q67FW5 361 aaPredicted RBP16.22■□□□□ 0.19
USP39-208ENST00000455732 TTC19Q6DKK2 380 aaPredicted RBP16.22■□□□□ 0.19
USP39-208ENST00000455732 TRABD2AQ86V40 505 aa16.22■□□□□ 0.19
USP39-208ENST00000455732 NUDT13Q86X67 352 aa16.22■□□□□ 0.19
USP39-208ENST00000455732 LGI4Q8N135 537 aa16.22■□□□□ 0.19
USP39-208ENST00000455732 C4orf33Q8N1A6 199 aa16.22■□□□□ 0.19
USP39-208ENST00000455732 NFAM1Q8NET5 270 aaPredicted RBP16.22■□□□□ 0.19
USP39-208ENST00000455732 HAS2Q92819 552 aa16.22■□□□□ 0.19
USP39-208ENST00000455732 BRF2Q9HAW0 419 aa16.22■□□□□ 0.19
USP39-208ENST00000455732 KCNK13Q9HB14 408 aa16.22■□□□□ 0.19
USP39-208ENST00000455732 ADAP2Q9NPF8 381 aa16.22■□□□□ 0.19
USP39-208ENST00000455732 LYARQ9NX58 379 aaKnown RBP16.22■□□□□ 0.19
USP39-208ENST00000455732 SNX6Q9UNH7 406 aa16.22■□□□□ 0.19
USP39-208ENST00000455732 ICE1Q9Y2F5 2266 aa16.21■□□□□ 0.19
USP39-208ENST00000455732 TLDC2A0PJX2 215 aa16.21■□□□□ 0.19
USP39-208ENST00000455732 DYTNA2CJ06 578 aa16.21■□□□□ 0.19
USP39-208ENST00000455732 UQCRHP07919 91 aa16.21■□□□□ 0.19
USP39-208ENST00000455732 CPN2P22792 545 aa16.21■□□□□ 0.19
USP39-208ENST00000455732 PKNOX1P55347 436 aa16.21■□□□□ 0.19
USP39-208ENST00000455732 TAS2R50P59544 299 aa16.21■□□□□ 0.19
USP39-208ENST00000455732 DNAJB13P59910 316 aa16.21■□□□□ 0.19
USP39-208ENST00000455732 TNFRSF17Q02223 184 aa16.21■□□□□ 0.19
USP39-208ENST00000455732 SERTAD2Q14140 314 aa16.21■□□□□ 0.19
USP39-208ENST00000455732 ZNF169Q14929 603 aaPredicted RBP16.21■□□□□ 0.19
USP39-208ENST00000455732 TLR1Q15399 786 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms