RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 PSMB5P28074 263 aa14.34□□□□□ -0.11
LDLR-202ENST00000455727 ST13P50502 369 aaKnown RBP14.34□□□□□ -0.11
LDLR-202ENST00000455727 RAB15P59190 212 aa14.34□□□□□ -0.11
LDLR-202ENST00000455727 CSNK1G2P78368 415 aa14.34□□□□□ -0.11
LDLR-202ENST00000455727 KCNC4Q03721 635 aa14.34□□□□□ -0.11
LDLR-202ENST00000455727 PRDX1Q06830 199 aaKnown RBP14.34□□□□□ -0.11
LDLR-202ENST00000455727 FAM109BQ6ICB4 259 aaPredicted RBP14.34□□□□□ -0.11
LDLR-202ENST00000455727 RHOXF1Q8NHV9 184 aa14.34□□□□□ -0.11
LDLR-202ENST00000455727 PSMA8Q8TAA3 256 aa14.34□□□□□ -0.11
LDLR-202ENST00000455727 TRUB1Q8WWH5 349 aaKnown RBP14.34□□□□□ -0.11
LDLR-202ENST00000455727 FERD3LQ96RJ6 166 aa14.34□□□□□ -0.11
LDLR-202ENST00000455727 INSM2Q96T92 566 aaPredicted RBP14.34□□□□□ -0.11
LDLR-202ENST00000455727 CDCA3Q99618 268 aaPredicted RBP14.34□□□□□ -0.11
LDLR-202ENST00000455727 TMEM121BQ9BXQ6 578 aaPredicted RBP14.34□□□□□ -0.11
LDLR-202ENST00000455727 PLA2G2FQ9BZM2 168 aa14.34□□□□□ -0.11
LDLR-202ENST00000455727 LMAN2LQ9H0V9 348 aa14.34□□□□□ -0.11
LDLR-202ENST00000455727 ACSS1Q9NUB1 689 aaPredicted RBP14.34□□□□□ -0.11
LDLR-202ENST00000455727 ENOPH1Q9UHY7 261 aa14.34□□□□□ -0.11
LDLR-202ENST00000455727 RAB23Q9ULC3 237 aa14.34□□□□□ -0.11
LDLR-202ENST00000455727 WDR37Q9Y2I8 494 aa14.34□□□□□ -0.11
LDLR-202ENST00000455727 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.34□□□□□ -0.11
LDLR-202ENST00000455727 HCN4Q9Y3Q4 1203 aa14.34□□□□□ -0.11
LDLR-202ENST00000455727 OR1A2Q9Y585 309 aa14.34□□□□□ -0.11
LDLR-202ENST00000455727 TRBC2A0A5B9 178 aa14.33□□□□□ -0.11
LDLR-202ENST00000455727 FEZF1A0PJY2 475 aa14.33□□□□□ -0.11
LDLR-202ENST00000455727 NDUFS4O43181 175 aa14.33□□□□□ -0.11
LDLR-202ENST00000455727 MAP2K4P45985 399 aa14.33□□□□□ -0.11
LDLR-202ENST00000455727 MLF2Q15773 248 aaPredicted RBP14.33□□□□□ -0.11
LDLR-202ENST00000455727 P3H2Q8IVL5 708 aa14.33□□□□□ -0.11
LDLR-202ENST00000455727 DEPDC4Q8N2C3 294 aa14.33□□□□□ -0.11
LDLR-202ENST00000455727 PARP8Q8N3A8 854 aa14.33□□□□□ -0.11
LDLR-202ENST00000455727 TTLQ8NG68 377 aa14.33□□□□□ -0.11
LDLR-202ENST00000455727 ZBED6CLQ96FA7 236 aaPredicted RBP14.33□□□□□ -0.11
LDLR-202ENST00000455727 CAMK1GQ96NX5 476 aa14.33□□□□□ -0.11
LDLR-202ENST00000455727 RAB11FIP5Q9BXF6 653 aa14.33□□□□□ -0.11
LDLR-202ENST00000455727 C1QTNF2Q9BXJ5 285 aa14.33□□□□□ -0.11
LDLR-202ENST00000455727 PREBQ9HCU5 417 aa14.33□□□□□ -0.11
LDLR-202ENST00000455727 RLIMQ9NVW2 624 aa14.33□□□□□ -0.11
LDLR-202ENST00000455727 ZFR2Q9UPR6 939 aaKnown RBP14.33□□□□□ -0.11
LDLR-202ENST00000455727 SH3GLB1Q9Y371 365 aa14.33□□□□□ -0.11
LDLR-202ENST00000455727 ZNF451Q9Y4E5 1061 aa14.33□□□□□ -0.11
LDLR-202ENST00000455727 OR1F1O43749 312 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 PAK4O96013 591 aaPredicted RBP14.33□□□□□ -0.12
LDLR-202ENST00000455727 FUCA1P04066 466 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 TFPTP0C1Z6 253 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 RANBP1P43487 201 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 RAB28P51157 221 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 C21orf59P57076 290 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 RPS21P63220 83 aaKnown RBP14.33□□□□□ -0.12
LDLR-202ENST00000455727 FGL2Q14314 439 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 UBE2UQ5VVX9 321 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 DUS1LQ6P1R4 473 aaKnown RBP14.33□□□□□ -0.12
LDLR-202ENST00000455727 UBE3DQ7Z6J8 389 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 DENND6BQ8NEG7 585 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 OR52J3Q8NH60 311 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 SLC38A5Q8WUX1 472 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 APOBEC4Q8WW27 367 aaKnown RBP14.33□□□□□ -0.12
LDLR-202ENST00000455727 FCGR1BQ92637 280 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 DNASE1L2Q92874 299 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 HSPBAP1Q96EW2 488 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 C12orf66Q96MD2 445 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 ZNF556Q9HAH1 456 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 SIRT3Q9NTG7 399 aaPredicted RBP14.33□□□□□ -0.12
LDLR-202ENST00000455727 SERGEFQ9UGK8 458 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 PSORS1C1Q9UIG5 152 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 KCND3Q9UK17 655 aa14.33□□□□□ -0.12
LDLR-202ENST00000455727 A0A1W2PP55 124 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 PRR19A6NJB7 356 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 CACNB4O00305 520 aaPredicted RBP14.32□□□□□ -0.12
LDLR-202ENST00000455727 PDE9AO76083 593 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 GADD45GO95257 159 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 RECKO95980 971 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 IFNW1P05000 195 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 ACP5P13686 325 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 DRD2P14416 443 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 WASP42768 502 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 ALDH9A1P49189 494 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 DUSP7Q16829 419 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 TMEM35AQ53FP2 167 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 OR4C11Q6IEV9 310 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 C6orf120Q7Z4R8 191 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 HORMAD2Q8N7B1 307 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 ZNF513Q8N8E2 541 aaPredicted RBP14.32□□□□□ -0.12
LDLR-202ENST00000455727 SMYD1Q8NB12 490 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 OR2A1Q8NGT9 310 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 OR2L8Q8NGY9 312 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 CREB3L4Q8TEY5 395 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 NIPSNAP1Q9BPW8 284 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 RHNO1Q9BSD3 238 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 BTBD1Q9H0C5 482 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 ABCG4Q9H172 646 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 FKBP14Q9NWM8 211 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 C5orf42Q9H799 3197 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 C5orf58C9J3I9 102 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 J3KTA2 159 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 TMPRSS11DO60235 418 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 LCMT2O60294 686 aaKnown RBP14.32□□□□□ -0.12
LDLR-202ENST00000455727 VIPP01282 170 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 CBLP22681 906 aa14.32□□□□□ -0.12
LDLR-202ENST00000455727 ITPRIPL2Q3MIP1 535 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms