RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 CCT3P49368 545 aaKnown RBP12.99□□□□□ -0.33
CLK3-203ENST00000454830 CDK9P50750 372 aaKnown RBP12.99□□□□□ -0.33
CLK3-203ENST00000454830 C21orf58P58505 322 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 GANABQ14697 944 aaKnown RBP12.99□□□□□ -0.33
CLK3-203ENST00000454830 ZNF750Q32MQ0 723 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 FBXO43Q4G163 708 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 GPR141Q7Z602 305 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 CCDC116Q8IYX3 515 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 DGCR14Q96DF8 476 aaKnown RBP12.99□□□□□ -0.33
CLK3-203ENST00000454830 PHF12Q96QT6 1004 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 DOHHQ9BU89 302 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 PAPOLBQ9NRJ5 636 aaKnown RBP12.99□□□□□ -0.33
CLK3-203ENST00000454830 DDX18Q9NVP1 670 aaKnown RBP12.99□□□□□ -0.33
CLK3-203ENST00000454830 ZNF624Q9P2J8 865 aaPredicted RBP12.99□□□□□ -0.33
CLK3-203ENST00000454830 SNX7Q9UNH6 387 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 CCDC88CQ9P219 2028 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 SLC28A2O43868 658 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 KIF1CO43896 1103 aaKnown RBP12.99□□□□□ -0.33
CLK3-203ENST00000454830 SERPINB1P30740 379 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 DNAJA1P31689 397 aaKnown RBP12.99□□□□□ -0.33
CLK3-203ENST00000454830 ALG11Q2TAA5 492 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 IFI44LQ53G44 452 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 C6orf120Q7Z4R8 191 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 CLVS1Q8IUQ0 354 aaPredicted RBP12.99□□□□□ -0.33
CLK3-203ENST00000454830 SFTPA2Q8IWL1 248 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 KCT2Q8NC54 265 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 TCEAL2Q9H3H9 227 aaPredicted RBP12.99□□□□□ -0.33
CLK3-203ENST00000454830 GPATCH2Q9NW75 528 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 AASSQ9UDR5 926 aa12.99□□□□□ -0.33
CLK3-203ENST00000454830 BCKDKO14874 412 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 IFNA14P01570 189 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 NDUFS1P28331 727 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 PDE7AQ13946 482 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 ACOT4Q8N9L9 421 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 ZFP28Q8NHY6 868 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 VANGL1Q8TAA9 524 aaPredicted RBP12.98□□□□□ -0.33
CLK3-203ENST00000454830 OR5P2Q8WZ92 322 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 MIR1-1HGQ9H1L0 117 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 RHCGQ9UBD6 479 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 SCN2AQ99250 2005 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 LOC100130705A0A1B0GUX0 176 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 ZNF860A6NHJ4 632 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 KLHL18O94889 574 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 PVRP15151 417 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 TYRP1P17643 537 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 KIAA1024LP59773 190 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 ABATP80404 500 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 EPS8Q12929 822 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 FADDQ13158 208 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 DCP2Q8IU60 420 aaKnown RBP12.98□□□□□ -0.33
CLK3-203ENST00000454830 TSTD1Q8NFU3 115 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 GAS2L1Q99501 681 aaPredicted RBP12.98□□□□□ -0.33
CLK3-203ENST00000454830 RASSF1Q9NS23 344 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 GIMAP4Q9NUV9 329 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 EBF1Q9UH73 591 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 TNFRSF11BO00300 401 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 NR2F1P10589 423 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 F3P13726 295 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 POU2F1P14859 743 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 CDH2P19022 906 aaPredicted RBP12.98□□□□□ -0.33
CLK3-203ENST00000454830 FPR1P21462 350 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 ADARB1P78563 741 aaKnown RBP12.98□□□□□ -0.33
CLK3-203ENST00000454830 RGS1Q08116 209 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 ZNF793Q6ZN11 406 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 HORMAD2Q8N7B1 307 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 FAM46DQ8NEK8 389 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 OR52E4Q8NGH9 312 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 AMBRA1Q9C0C7 1298 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 ZNF639Q9UID6 485 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 GMPPBQ9Y5P6 360 aa12.98□□□□□ -0.33
CLK3-203ENST00000454830 H0YAE9 185 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 TNFP01375 233 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 C9P02748 559 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 PIGFQ07326 219 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 TGM3Q08188 693 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 C18orf63Q68DL7 685 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 OLIG3Q7RTU3 272 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 UBE3DQ7Z6J8 389 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 OR5D16Q8NGK9 328 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 DOK4Q8TEW6 326 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 POP5Q969H6 163 aaKnown RBP12.97□□□□□ -0.33
CLK3-203ENST00000454830 TAMM41Q96BW9 452 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 KCNC2Q96PR1 638 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 ZNF717Q9BY31 904 aaPredicted RBP12.97□□□□□ -0.33
CLK3-203ENST00000454830 OR6C2Q9NZP2 312 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 DOLKQ9UPQ8 538 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 ATG4BQ9Y4P1 393 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 PCDHGA8Q9Y5G5 932 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 PLXND1Q9Y4D7 1925 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 PGRMC2O15173 223 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 NME6O75414 186 aaPredicted RBP12.97□□□□□ -0.33
CLK3-203ENST00000454830 PRSS23O95084 383 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 APBB3O95704 486 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 THEGLP0DJG4 465 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 SPTBP11277 2137 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 PEBP1P30086 187 aaKnown RBP12.97□□□□□ -0.33
CLK3-203ENST00000454830 STXBP1P61764 594 aaKnown RBP12.97□□□□□ -0.33
CLK3-203ENST00000454830 SELENOWP63302 87 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 PPP2R2BQ00005 443 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 APOFQ13790 326 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms