RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 OR4F6Q8NGB9 312 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 ZNF483Q8TF39 744 aaPredicted RBP11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 CENPKQ9BS16 269 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 C1QTNF3Q9BXJ4 246 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 ZNF717Q9BY31 904 aaPredicted RBP11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 ALOXE3Q9BYJ1 711 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 SLC29A3Q9BZD2 475 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 AGPAT4Q9NRZ5 378 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 ZNF500O60304 480 aaPredicted RBP11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 LDB3O75112 727 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 GSTA1P08263 222 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 CPN2P22792 545 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 HSD17B3P37058 310 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 SLCO1A2P46721 670 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 GPR143P51810 404 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 HERVK_113P63132 956 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 STX4Q12846 297 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 TUBA3CQ13748 450 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 TERF2Q15554 542 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 UNC50Q53HI1 259 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 SGO1Q5FBB7 561 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 FRG2Q64ET8 278 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 TTC19Q6DKK2 380 aaPredicted RBP11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 TUBA3EQ6PEY2 450 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 GPR180Q86V85 440 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 ZCCHC7Q8N3Z6 543 aaKnown RBP11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 APCDD1LQ8NCL9 501 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 FAR1Q8WVX9 515 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 ANKRD9Q96BM1 317 aaPredicted RBP11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 SIGLEC12Q96PQ1 595 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 FRG2BQ96QU4 278 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 TAAR6Q96RI8 345 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 ERVK-6Q9BXR3 956 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 DDX31Q9H8H2 851 aaKnown RBP11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 ADAP2Q9NPF8 381 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 ANKRD10Q9NXR5 420 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 VTI1BQ9UEU0 232 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 DCDC2Q9UHG0 476 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 PPT2Q9UMR5 302 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 PPIEQ9UNP9 301 aaKnown RBP11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 ATG4BQ9Y4P1 393 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 SPACA6W5XKT8 324 aa11.9□□□□□ -0.5
PRPF40A-203ENST00000448428 SPENQ96T58 3664 aaKnown RBP11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 UBR5O95071 2799 aaPredicted RBP11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 BLACEA4D250 179 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 GABRR3A8MPY1 467 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 PROM1O43490 865 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 PRAMEF2O60811 474 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 EEDO75530 441 aaKnown RBP11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 SUPT7LO94864 414 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 OTCP00480 354 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 IFNA16P05015 189 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 IMPDH1P20839 514 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 TPP2P29144 1249 aaPredicted RBP11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 HNRNPH2P55795 449 aaKnown RBP11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 MLF1P58340 268 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 ID2Q02363 134 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 CLCQ05315 142 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 ELAVL1Q15717 326 aaKnown RBP11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 GGTA1PQ4G0N0 100 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 ZNF678Q5SXM1 525 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 ZNF468Q5VIY5 522 aaPredicted RBP11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 FAM219BQ5XKK7 198 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 C18orf63Q68DL7 685 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 SPINK14Q6IE38 97 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 MRM1Q6IN84 353 aaKnown RBP11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 LETMD1Q6P1Q0 360 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 FAM180AQ6UWF9 173 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 TDRPQ86YL5 185 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 OR4N5Q8IXE1 308 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 CNPY4Q8N129 248 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 LGI4Q8N135 537 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 ARMC10Q8N2F6 343 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 TMEM132CQ8N3T6 1108 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 MDS2Q8NDY4 140 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 SUN3Q8TAQ9 357 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 PRR7Q8TB68 274 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 TRPC4APQ8TEL6 797 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 PTPMT1Q8WUK0 201 aaPredicted RBP11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 NCLNQ969V3 563 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 SERPINI1Q99574 410 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 UTP23Q9BRU9 249 aaKnown RBP11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 DEFB126Q9BYW3 111 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 RPF2Q9H7B2 306 aaKnown RBP11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 FARSBQ9NSD9 589 aaKnown RBP11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 MS4A12Q9NXJ0 267 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 ABI3Q9P2A4 366 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 ZNF225Q9UK10 706 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 ZNF223Q9UK11 482 aaPredicted RBP11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 EMCNQ9ULC0 261 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 ASB4Q9Y574 426 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 CLCA3PQ9Y6N3 262 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 ZGRF1Q86YA3 2104 aa11.89□□□□□ -0.51
PRPF40A-203ENST00000448428 A0A0A6YYD5 115 aa11.88□□□□□ -0.51
PRPF40A-203ENST00000448428 TRBV11-1A0A0K0K1C0 115 aa11.88□□□□□ -0.51
PRPF40A-203ENST00000448428 A0A1W2PR48 441 aa11.88□□□□□ -0.51
PRPF40A-203ENST00000448428 ANKUB1A6NFN9 424 aa11.88□□□□□ -0.51
PRPF40A-203ENST00000448428 SMIM23A6NLE4 172 aa11.88□□□□□ -0.51
PRPF40A-203ENST00000448428 WASHC1A8K0Z3 465 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms