RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ANXA8L1Q5VT79 327 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 UBE3DQ7Z6J8 389 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 CA13Q8N1Q1 262 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 IL22RA1Q8N6P7 574 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 GALNT6Q8NCL4 622 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 CMTM5Q96DZ9 223 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 PEX11GQ96HA9 241 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 FCRL1Q96LA6 429 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 SLC46A1Q96NT5 459 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 BBS4Q96RK4 519 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 BRINP2Q9C0B6 783 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 EHD3Q9NZN3 535 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 BAIAP2L1Q9UHR4 511 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 COL27A1Q8IZC6 1860 aaPredicted RBP9.54□□□□□ -0.88
CD44-207ENST00000425428 PIEZO1Q92508 2521 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 H3BMH7 237 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 FCHO1O14526 889 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 ANGPT2O15123 496 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 PROM1O43490 865 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 FOXS1O43638 330 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 HYAL3O43820 417 aaPredicted RBP9.54□□□□□ -0.88
CD44-207ENST00000425428 LRATO95237 230 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 TBX6O95947 436 aaPredicted RBP9.54□□□□□ -0.88
CD44-207ENST00000425428 HEXBP07686 556 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 FHP07954 510 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 SLC5A2P31639 672 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 ETV5P41161 510 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 MNAT1P51948 309 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 DIO3P55073 304 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 NME5P56597 212 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 OLR1P78380 273 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 SHC2P98077 582 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 SERTAD2Q14140 314 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 TMEM198Q66K66 360 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 IGF2-ASQ6U949 168 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 ZNF793Q6ZN11 406 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 OVCH1Q7RTY7 1134 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 FAM47BQ8NA70 645 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 OR4K14Q8NGD5 310 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 CLHC1Q8NHS4 586 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 GFM2Q969S9 779 aaKnown RBP9.54□□□□□ -0.88
CD44-207ENST00000425428 TM4SF18Q96CE8 201 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 KLHL29Q96CT2 875 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 MARK4Q96L34 752 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 ZNF578Q96N58 590 aaPredicted RBP9.54□□□□□ -0.88
CD44-207ENST00000425428 GBP5Q96PP8 586 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 MAPKAP1Q9BPZ7 522 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 PELOQ9BRX2 385 aaKnown RBP9.54□□□□□ -0.88
CD44-207ENST00000425428 PRTFDC1Q9NRG1 225 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 SDR39U1Q9NRG7 319 aaPredicted RBP9.54□□□□□ -0.88
CD44-207ENST00000425428 CCDC167Q9P0B6 97 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 C19orf25Q9UFG5 118 aaPredicted RBP9.54□□□□□ -0.88
CD44-207ENST00000425428 KCND3Q9UK17 655 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 UTS2RQ9UKP6 389 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 MRPS2Q9Y399 296 aaKnown RBP9.54□□□□□ -0.88
CD44-207ENST00000425428 MMACHCQ9Y4U1 282 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 TMEM184BQ9Y519 407 aaPredicted RBP9.54□□□□□ -0.88
CD44-207ENST00000425428 GPR45Q9Y5Y3 372 aa9.54□□□□□ -0.88
CD44-207ENST00000425428 COPG1Q9Y678 874 aaKnown RBP9.54□□□□□ -0.88
CD44-207ENST00000425428 FAM234BA2RU67 622 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 CCDC154A6NI56 674 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 PCDH17O14917 1159 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 SCAMP2O15127 329 aaKnown RBP9.53□□□□□ -0.88
CD44-207ENST00000425428 CFLARO15519 480 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 B4GALT2O60909 372 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 ERAL1O75616 437 aaKnown RBP9.53□□□□□ -0.88
CD44-207ENST00000425428 IGHEP01854 428 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 CTSBP07858 339 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 CYC1P08574 325 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 MPIP34949 423 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 KIR3DL1P43629 444 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 POLR2JP52435 117 aaKnown RBP9.53□□□□□ -0.88
CD44-207ENST00000425428 HSD17B7P56937 341 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 RAE1P78406 368 aaKnown RBP9.53□□□□□ -0.88
CD44-207ENST00000425428 GABPB1Q06547 395 aaPredicted RBP9.53□□□□□ -0.88
CD44-207ENST00000425428 STX5Q13190 355 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 RUNX2Q13950 521 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 PTGR1Q14914 329 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 PRAMEF17Q5VTA0 474 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 PRSS41Q7RTY9 318 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 PDSS2Q86YH6 399 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 CPSF7Q8N684 471 aaKnown RBP9.53□□□□□ -0.88
CD44-207ENST00000425428 ZBED6CLQ96FA7 236 aaPredicted RBP9.53□□□□□ -0.88
CD44-207ENST00000425428 RBM18Q96H35 190 aaKnown RBP9.53□□□□□ -0.88
CD44-207ENST00000425428 SLC25A23Q9BV35 468 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 GPR87Q9BY21 358 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 SYNPO2LQ9H987 977 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 LHX9Q9NQ69 397 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 ASB4Q9Y574 426 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 PCDHA9Q9Y5H5 950 aa9.53□□□□□ -0.88
CD44-207ENST00000425428 C21orf140B9A014 251 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 C9orf172C9J069 976 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 NR5A2O00482 541 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 EBAG9O00559 213 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 PDPK1O15530 556 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 TMPRSS11DO60235 418 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 OR10H2O60403 315 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 RAD1O60671 282 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 CTNSO60931 367 aa9.52□□□□□ -0.88
CD44-207ENST00000425428 TIAF1O95411 115 aa9.52□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms